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fix probe-set inclusion assertion - #12601

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fmalmeida wants to merge 4 commits into
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12600-cellranger-multi-fails-in-scrnaseq-when-running-cmo
Open

fix probe-set inclusion assertion#12601
fmalmeida wants to merge 4 commits into
masterfrom
12600-cellranger-multi-fails-in-scrnaseq-when-running-cmo

add test for "pipeline scenario"

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