Add HRA fallopian tube NTR template (58 new terms)

.github/workflows/docs.yml

@@ -16,11 +16,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout main
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
 
       - name: Deploy docs
         uses: mhausenblas/mkdocs-deploy-gh-pages@master
         # Or use mhausenblas/mkdocs-deploy-gh-pages@nomaterial to build without the mkdocs-material theme
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           CONFIG_FILE: mkdocs.yaml
+

bulk_ntr_workflow/source_data/fallopian_tube.csv

@@ -0,0 +1,64 @@
+tables,as,as_label,UBERON ID,Pull Request/Issue,parents_as,parents_as_label,references
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-ampulla,basement membrane of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of Fallopian tube ampulla,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-infundibulum,basement membrane of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of Fallopian tube infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-intramural-segment,basement membrane of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of Fallopian tube intramural segment,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-isthmus,basement membrane of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of Fallopian tube isthmus,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-ampulla,fluid of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-fimbria,fluid of fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-infundibulum,fluid of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-intramural-segment,fluid of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-isthmus,fluid of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-ampulla,inner muscle layer of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-infundibulum,inner muscle layer of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-intramural-segment,inner muscle layer of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-isthmus,inner muscle layer of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of fallopian tube,,,UBERON:0003889,fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-fallopian-tube-ampulla,lamina propria Fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110"
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-fimbria,lamina propria of Fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110"
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-infundibulum,lamina propria of Fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110"
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-intramural-segment,lamina propria of Fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:16938110, PMID:25994820"
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-isthmus,lamina propria of Fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110"
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lymphatic-of-mesosalpinx,lymphatic of mesosalpinx,,,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mesothelium-of-mesosalpinx,mesothelium of mesosalpinx,,,UBERON:0012331,mesosalpinx,https://doi.org/10.1016/B978-0-12-801238-3.64401-X
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-ampulla,middle muscle layer of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-infundibulum,middle muscle layer of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-intramural-segment,middle muscle layer of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-isthmus,middle muscle layer of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-ampulla,mucosa of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla,plica of Fallopian tube ampulla,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-fimbria,mucosa of fallopian tube fimbria,,,UBERON:8410010,fimbria of uterine tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-infundibulum,mucosa of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum,plica of Fallopian tube infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-intramural-segment,mucosa of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment,plica of Fallopian tube intramural segment,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-isthmus,mucosa of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus,plica of Fallopian tube isthmus,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of Fallopian tube ampulla,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of Fallopian tube infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of Fallopian tube intramural segment,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of Fallopian tube isthmus,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-ampulla,nerve of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-fimbria,nerve of fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-infundibulum,nerve of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-intramural-segment,nerve of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-isthmus,nerve of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-mesosalpinx,nerve of mesosalpinx,,,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-ampulla,outer muscle layer of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-infundibulum,outer muscle layer of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-intramural-segment,outer muscle layer of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-isthmus,outer muscle layer of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla,plica of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum,plica of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment,plica of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus,plica of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-ampulla,serosa of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of Fallopian tube ampulla,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-infundibulum,serosa of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of Fallopian tube infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-intramural-segment,serosa of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of Fallopian tube intramural segment,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-isthmus,serosa of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of Fallopian tube isthmus,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx,,,UBERON:0012331,mesosalpinx,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-ampulla,vasculature of Fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-fimbria,vasculature of Fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-infundibulum,vasculature of Fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-intramural-segment,vasculature of Fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-isthmus,vasculature of Fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-mesosalpinx,vasculature of mesosalpinx,,,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,
+fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,

docs/odk-workflows/RepositoryFileStructure.md

@@ -49,3 +49,5 @@ These are the components in UBERON
 | vasculature_class.owl | None |
 | hra_depiction_3d_images.owl | https://raw.githubusercontent.com/hubmapconsortium/ccf-validation-tools/master/owl/hra_uberon_3d_images.owl |
 | hra_skeleton.owl | None |
+| hra_fallopian_tube_groups.owl | None |
+| hra_fallopian_tube.owl | None |

src/ontology/Makefile

@@ -10,7 +10,7 @@
 # More information: https://github.com/INCATools/ontology-development-kit/
 
 # Fingerprint of the configuration file when this Makefile was last generated
-CONFIG_HASH=                4a0a1ec54c99987a5f925c045d14b90a8cea94072e234dab7b5b4841b16aa062
+CONFIG_HASH=                91414c1a5f963a19baa027e134f3e31fdf6ee4b115f70a6cdeec15180d073d89
 
 
 # ----------------------------------------
@@ -59,7 +59,7 @@ OBODATE ?=                  $(shell date +'%d:%m:%Y %H:%M')
 VERSION=                    $(TODAY)
 ANNOTATE_ONTOLOGY_VERSION = annotate -V $(ONTBASE)/releases/$(VERSION)/$@ --annotation owl:versionInfo $(VERSION)
 ANNOTATE_CONVERT_FILE =     annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) convert -f ofn --output $@.tmp.owl && mv $@.tmp.owl $@
-OTHER_SRC =                 $(PATTERNDIR)/definitions.owl $(COMPONENTSDIR)/disjoint_union_over.owl $(COMPONENTSDIR)/mappings.owl $(COMPONENTSDIR)/in-subset.owl $(COMPONENTSDIR)/hra_subset.owl $(COMPONENTSDIR)/vasculature_class.owl $(COMPONENTSDIR)/hra_depiction_3d_images.owl $(COMPONENTSDIR)/hra_skeleton.owl 
+OTHER_SRC =                 $(PATTERNDIR)/definitions.owl $(COMPONENTSDIR)/disjoint_union_over.owl $(COMPONENTSDIR)/mappings.owl $(COMPONENTSDIR)/in-subset.owl $(COMPONENTSDIR)/hra_subset.owl $(COMPONENTSDIR)/vasculature_class.owl $(COMPONENTSDIR)/hra_depiction_3d_images.owl $(COMPONENTSDIR)/hra_skeleton.owl $(COMPONENTSDIR)/hra_fallopian_tube_groups.owl $(COMPONENTSDIR)/hra_fallopian_tube.owl 
 ONTOLOGYTERMS =             $(TMPDIR)/ontologyterms.txt
 EDIT_PREPROCESSED =         $(TMPDIR)/$(ONT)-preprocess.owl
 
@@ -493,6 +493,8 @@ recreate-components:
 		--assume-new=$(TMPDIR)/stamp-component-vasculature_class.owl \
 		--assume-new=$(TMPDIR)/stamp-component-hra_depiction_3d_images.owl \
 		--assume-new=$(TMPDIR)/stamp-component-hra_skeleton.owl \
+		--assume-new=$(TMPDIR)/stamp-component-hra_fallopian_tube_groups.owl \
+		--assume-new=$(TMPDIR)/stamp-component-hra_fallopian_tube.owl \
 		COMP=true IMP=false MIR=true PAT=true all_components
 
 .PHONY: no-mirror-recreate-components
@@ -504,6 +506,8 @@ no-mirror-recreate-components:
 		--assume-new=$(TMPDIR)/stamp-component-vasculature_class.owl \
 		--assume-new=$(TMPDIR)/stamp-component-hra_depiction_3d_images.owl \
 		--assume-new=$(TMPDIR)/stamp-component-hra_skeleton.owl \
+		--assume-new=$(TMPDIR)/stamp-component-hra_fallopian_tube_groups.owl \
+		--assume-new=$(TMPDIR)/stamp-component-hra_fallopian_tube.owl \
 		COMP=true IMP=false MIR=false PAT=true all_components
 
 .PHONY: recreate-%
@@ -574,6 +578,18 @@ $(COMPONENTSDIR)/hra_skeleton.owl: $(TEMPLATEDIR)/hra-skeleton.template.tsv $(TM
 		 $(ANNOTATE_CONVERT_FILE)
 .PRECIOUS: $(COMPONENTSDIR)/hra_skeleton.owl
 
+$(COMPONENTSDIR)/hra_fallopian_tube_groups.owl: $(TEMPLATEDIR)/hra-fallopian-tube-groups.template.tsv $(TMPDIR)/stamp-component-hra_fallopian_tube_groups.owl
+	$(ROBOT) template  \
+		 --template $(TEMPLATEDIR)/hra-fallopian-tube-groups.template.tsv \
+		 $(ANNOTATE_CONVERT_FILE)
+.PRECIOUS: $(COMPONENTSDIR)/hra_fallopian_tube_groups.owl
+
+$(COMPONENTSDIR)/hra_fallopian_tube.owl: $(TEMPLATEDIR)/hra-fallopian-tube.template.tsv $(TMPDIR)/stamp-component-hra_fallopian_tube.owl
+	$(ROBOT) template  \
+		 --template $(TEMPLATEDIR)/hra-fallopian-tube.template.tsv \
+		 $(ANNOTATE_CONVERT_FILE)
+.PRECIOUS: $(COMPONENTSDIR)/hra_fallopian_tube.owl
+
 endif # COMP=true
 # ----------------------------------------
 # Mirroring upstream ontologies

src/ontology/catalog-v001.xml

@@ -10,6 +10,8 @@
     <uri name="http://purl.obolibrary.org/obo/uberon/components/vasculature_class.owl" uri="components/vasculature_class.owl" />
     <uri name="http://purl.obolibrary.org/obo/uberon/components/hra_depiction_3d_images.owl" uri="components/hra_depiction_3d_images.owl" />
     <uri name="http://purl.obolibrary.org/obo/uberon/components/hra_skeleton.owl" uri="components/hra_skeleton.owl" />
+    <uri name="http://purl.obolibrary.org/obo/uberon/components/hra_fallopian_tube.owl" uri="components/hra_fallopian_tube.owl" />
+    <uri name="http://purl.obolibrary.org/obo/uberon/components/hra_fallopian_tube_groups.owl" uri="components/hra_fallopian_tube_groups.owl" />
     <uri name="http://purl.obolibrary.org/obo/uberon/patterns/definitions.owl" uri="../patterns/definitions.owl" />
   </group>
   <group id="Folder Repository, directory=, recursive=false, Auto-Update=false, version=2" prefer="public">