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Add HRA fallopian tube NTR template (58 new terms) #3715

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Merged
zhengj2007 merged 11 commits into from
Jul 22, 2026
Merged

Add HRA fallopian tube NTR template (58 new terms) #3715

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49f6cf2
Add HRA fallopian tube NTR template (58 new terms)
zhengj2007 May 25, 2026
369fd6f
Merge branch 'master' into add-hra-fallopian_tube-ntr
dosumis Jun 1, 2026
f8777a6
Register hra-fallopian-tube templates with ODK
dosumis Jun 1, 2026
d26bc0b
Add catalog-v001.xml redirects for hra-fallopian-tube components
dosumis Jun 1, 2026
348b64d
Fix hra-fallopian-tube template build
dosumis Jun 1, 2026
6379550
Set intramural muscle layer parents in fallopian tube template
zhengj2007 Jul 6, 2026
97ca8c6
Merge branch 'master' into add-hra-fallopian_tube-ntr
dosumis Jul 6, 2026
1ca3f2a
Address curator feedback on HRA fallopian tube template
github-actions[bot] Jul 6, 2026
8f9da52
Move report artifacts out of src/templates to bulk_ntr_workflow/outputs/
dosumis Jul 6, 2026
28f8e76
Merge branch 'master' into add-hra-fallopian_tube-ntr
dosumis Jul 20, 2026
804df02
Apply suggestion from @ai4c-agent[bot]
dosumis Jul 20, 2026
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1 change: 1 addition & 0 deletions .github/workflows/docs.yml
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Expand Up @@ -24,3 +24,4 @@ jobs:
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
CONFIG_FILE: mkdocs.yaml

6 changes: 6 additions & 0 deletions bulk_ntr_workflow/outputs/hra-fallopian-tube-reports/candidates.tsv
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label as_iri uberon_id note
mucosa of fallopian tube infundibulum UBERON:0005049 confirmed_match (confidence: high)
muscle layer of oviduct infundibulum UBERON:0007182 confirmed_match (confidence: high)
serosa of fallopian tube infundibulum UBERON:0007181 confirmed_match (confidence: high)
inner muscle layer of fallopian tube infundibulum UBERON:0012368 possible_match (UBERON:0012368 'circular muscle layer of muscular coat' is the general term for inner circular muscle layers with synonyms 'inner muscularis' and 'inner muscularis layer'. Could serve as genus for this specific infundibulum circular layer.)
outer muscle layer of fallopian tube infundibulum UBERON:0012369 possible_match (UBERON:0012369 'longitudinal muscle layer of muscular coat' is the general term for outer longitudinal muscle layers with synonyms 'outer muscularis' and 'outer muscularis layer'. Could serve as genus for this specific infundibulum longitudinal layer.)
38 changes: 38 additions & 0 deletions bulk_ntr_workflow/outputs/hra-fallopian-tube-reports/errors.tsv
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label as_iri issue_type parent_id parent_label detail
basement membrane of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla wall of Fallopian tube ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent
basement membrane of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum wall of Fallopian tube infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent
basement membrane of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment wall of Fallopian tube intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent
basement membrane of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus wall of Fallopian tube isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent
fluid of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent
inner muscle layer of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla muscle layer of oviduct ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent
inner muscle layer of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum muscle layer of oviduct infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent
inner muscle layer of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment muscle layer of oviduct intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent
inner muscle layer of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus muscle layer of oviduct isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent
lamina propria of Fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent
lymphatic of mesosalpinx https://purl.org/ccf/ASCTB-TEMP_lymphatic-of-mesosalpinx asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx serous membrane lining of mesosalpinx Parent not yet in UBERON; subagent should search OLS4 for correct parent
middle muscle layer of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla muscle layer of oviduct ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent
middle muscle layer of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum muscle layer of oviduct infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent
middle muscle layer of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment muscle layer of oviduct intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent
middle muscle layer of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus muscle layer of oviduct isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent
mucosa of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla plica of Fallopian tube ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent
mucosa of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum plica of Fallopian tube infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent
mucosa of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment plica of Fallopian tube intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent
mucosa of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus plica of Fallopian tube isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent
muscle layer of oviduct ampulla https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla wall of Fallopian tube ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent
muscle layer of oviduct infundibulum https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum wall of Fallopian tube infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent
muscle layer of oviduct intramural segment https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment wall of Fallopian tube intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent
muscle layer of oviduct isthmus https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus wall of Fallopian tube isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent
nerve of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent
nerve of mesosalpinx https://purl.org/ccf/ASCTB-TEMP_nerve-of-mesosalpinx asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx serous membrane lining of mesosalpinx Parent not yet in UBERON; subagent should search OLS4 for correct parent
outer muscle layer of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla muscle layer of oviduct ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent
outer muscle layer of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum muscle layer of oviduct infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent
outer muscle layer of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment muscle layer of oviduct intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent
outer muscle layer of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus muscle layer of oviduct isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent
plica of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent
serosa of fallopian tube ampulla https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-ampulla asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla wall of Fallopian tube ampulla Parent not yet in UBERON; subagent should search OLS4 for correct parent
serosa of fallopian tube infundibulum https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-infundibulum asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum wall of Fallopian tube infundibulum Parent not yet in UBERON; subagent should search OLS4 for correct parent
serosa of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment wall of Fallopian tube intramural segment Parent not yet in UBERON; subagent should search OLS4 for correct parent
serosa of fallopian tube isthmus https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-isthmus asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus wall of Fallopian tube isthmus Parent not yet in UBERON; subagent should search OLS4 for correct parent
vasculature of Fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent
vasculature of mesosalpinx https://purl.org/ccf/ASCTB-TEMP_vasculature-of-mesosalpinx asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx serous membrane lining of mesosalpinx Parent not yet in UBERON; subagent should search OLS4 for correct parent
wall of fallopian tube intramural segment https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube intramural segment of Fallopian tube Parent not yet in UBERON; subagent should search OLS4 for correct parent
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