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Add module: pcangsd/inbreeding - #12587

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ASendellPrice wants to merge 5 commits into
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ASendellPrice:pcangsd_inbreeding_coefficients
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Add module: pcangsd/inbreeding#12587
ASendellPrice wants to merge 5 commits into
nf-core:masterfrom
ASendellPrice:pcangsd_inbreeding_coefficients

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This PR adds a new module pcangsd/inbreeding for estimating per-sample inbreeding coefficients from genotype likelihoods using pcangsd.

PR checklist

Closes #12496

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda

@ASendellPrice ASendellPrice self-assigned this Aug 5, 2026
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new module: PCANGSD/INBREEDING

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