New peak scoring and normalization options - #4170

Draft

nickshulman wants to merge 64 commits into

Skyline/work/20260428_PeakScoringAndNormalization

Commits on Mar 29, 2026

RT Loess implementation
nickshulman
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ee538ab
SumCoelutionScoreCalc
nickshulman
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c1ea3d8

Commits on Mar 30, 2026

Commits on Mar 31, 2026

Commits on Apr 1, 2026

Add View > Peak Areas > RT LOESS Curves menu item
nickshulman
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a041c44
Merge branch 'master' of https://github.com/ProteoWizard/pwiz into skyline/work/20260329_PeakScoringAndNormalization
nickshulman
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19b2166
Change graph so that after normalization all replicates end up looking like the median.
nickshulman
committed
7a99db8

Commits on Apr 5, 2026

Commits on Apr 11, 2026

Merge branch 'master' of https://github.com/ProteoWizard/pwiz into skyline/work/20260329_PeakScoringAndNormalization
nickshulman
committed
c28d859

Commits on Apr 21, 2026

Merge branch 'master' into skyline/work/20260329_PeakScoringAndNormalization
nickshulman
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e08f4cc

Commits on Apr 23, 2026

Merge branch 'master' into skyline/work/20260329_PeakScoringAndNormalization
nickshulman
authored
8f4593a

Commits on Apr 24, 2026

Merge branch 'master' into skyline/work/20260329_PeakScoringAndNormalization
nickshulman
authored
fba833b

Commits on Apr 28, 2026

Merge branch 'master' of https://github.com/ProteoWizard/pwiz into Skyline/work/20260428_PeakScoringAndNormalization
nickshulman
committed
a8d7e92

Commits on Apr 30, 2026

Commits on May 1, 2026

Display legend when peptides clustered
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8600c2f
NormalizationDataProvider
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4fd1aa0
Parallelize RtLoessCurves
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0168b3a
Use larger palette
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595852b
Show selected replicate in red
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7b659ba
Select replicate when you click on it
nickshulman
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4707f1e
Make selection line wider
nickshulman
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63ca6bc

Commits on May 5, 2026

Commits on May 6, 2026

Commits on May 7, 2026

PolishedPeptideAbundances
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c95fc9f
MedianPolishTest
nickshulman
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abea62d
Merge branch 'master' of https://github.com/ProteoWizard/pwiz into Skyline/work/20260428_PeakScoringAndNormalization
nickshulman
committed
70b4cfc

Commits on May 8, 2026

MedianPolishSmallTest
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75f5ba8
MedianPolishMediumTest
nickshulman
committed
e59cf1d

Commits on May 11, 2026

Change median polish implementation to get closer results to Skyline-prism
nickshulman
committed
aaf1f41

Commits on May 13, 2026

Merge branch 'master' of https://github.com/ProteoWizard/pwiz into Skyline/work/20260428_PeakScoringAndNormalization
nickshulman
committed
0090698

Commits on May 14, 2026

Merge branch 'master' of https://github.com/ProteoWizard/pwiz into Skyline/work/20260428_PeakScoringAndNormalization
nickshulman
committed
432d350

Commits on May 18, 2026

Commits on May 19, 2026

Commits on May 20, 2026