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Pull requests: ProteoWizard/pwiz

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Pull requests list

osprey: Made the Stage-7 join fold run by run on every route, and retired --input-scores osprey Osprey / OspreySharp DIA proteomics search tool
#4646 opened Sep 8, 2026 by brendanx67 Member Loading…
9 of 10 tasks
3
pwiz: Fixed four vendor readers failing from an installer-based install pwiz ProteoWizard/msconvert changes - create Skyline/work branch
#4640 opened Sep 4, 2026 by chambm Member Loading…
7 of 8 tasks
skyline: Port the native waters_connect/UNIFI readers to IdentityModel 7
#4637 opened Sep 3, 2026 by chambm Member Loading…
17
Port ProteoWizard core to .NET 10
#4619 opened Aug 26, 2026 by chambm Member • Draft
5 tasks
12
skyline: Made Skyline system-DPI-aware with Start Page and tree scaling skyline Skyline application changes - create Skyline/work branch
#4602 opened Aug 21, 2026 by rita-gwen Contributor • Draft
5 tasks done
2
osprey: Add squared-error objective to Osprey.ML GradientBoostedTrees osprey Osprey / OspreySharp DIA proteomics search tool
#4595 opened Aug 20, 2026 by maccoss Contributor Loading…
1
4
skyline: Stop skipping spectra that have empty m/z intensity arrays skyline Skyline application changes - create Skyline/work branch
#4589 opened Aug 19, 2026 by nickshulman Contributor Loading…
7
osprey: Made ProteoWizard the only spectrum reader on net10.0 (#4497) osprey Osprey / OspreySharp DIA proteomics search tool
#4588 opened Aug 19, 2026 by brendanx67 Member Loading…
11 tasks done
Proteo wizard master
#4574 opened Aug 13, 2026 by kpnovoselov Loading…
10
Allow cancelling "Export Report" from JSON Tool Service API
#4546 opened Aug 7, 2026 by nickshulman Contributor • Draft
skyline: Stopped inferring a Waters lockmass function from waters_connect mzML skyline Skyline application changes - create Skyline/work branch
#4498 opened Jul 29, 2026 by bspratt Member Loading…
6 tasks done
40
Fixed sparse and marker-overlapping labels on Volcano and Relative Abundance plots
#4495 opened Jul 28, 2026 by rita-gwen Contributor Loading…
6 tasks done
1
7
Open document directly from .sky.zip without extracting if necessary files are uncompressed
#4426 opened Jul 16, 2026 by nickshulman Contributor • Draft
4 tasks done
19
Filter chromatogram extraction on uninterpreted mzML CV/user parameters
#4422 opened Jul 15, 2026 by bspratt Member Loading…
7 tasks done
47
Site-determining ion assistant for modification localization
#4391 opened Jul 8, 2026 by rita-gwen Contributor Loading…
5 tasks done
5
Updated PSI-MS CVs and Thermo RawFileReader to 5.1.0.27
#4339 opened Jun 29, 2026 by chambm Member Loading…
2 tasks done
3
pwiz-sharp: added mzPeak format support (read, write, msconvert)
#4311 opened Jun 17, 2026 by chambm Member Loading…
2 tasks done
4
Add Sage DDA search engine to Skyline
#4303 opened Jun 15, 2026 by chambm Member Loading…
2 tasks done
10
Add observed ion mobility and CCS to chromatogram extraction
#4301 opened Jun 14, 2026 by bspratt Member Loading…
6 tasks done
1
50
Added waters_connect URL support to the command-line interface
#4282 opened Jun 10, 2026 by chambm Member Loading…
4 tasks done
8
New peak scoring and normalization options
#4170 opened Apr 28, 2026 by nickshulman Contributor • Draft
Warn when ion mobility filtering is disabled but IM values are available (#4150)
#4154 opened Apr 16, 2026 by bspratt Member • Draft
1 task done
1
7
Improve performance of saving .sky file
#4136 opened Apr 3, 2026 by nickshulman Contributor Loading…
9
Feature: Add Relative Standard Error to Calibration Metrics
#4130 opened Apr 1, 2026 by apsoras Loading…
12
Added screenshot comparison mode to TestRunner (pause=-4)
#3861 opened Jan 23, 2026 by chambm Member • Draft
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