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Annotation_MutationPredictionAlgorithm
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Julien Guérin edited this page
Jan 26, 2021
·
5 revisions
Annotation_MutationPredictionAlgorithm
Data Element Concept
Attribute
Value
ObjectClass
Annotation
ObjectProperty
MutationPredictionAlgorithm
DataElementConcept
Annotation_MutationPredictionAlgorithm
ObjectPropertyLabelEN
Mutation Prediction Algorithm
ObjectPropertyLabelFR
Mutation Prediction Algorithm
DataElementConceptDefEN
Algorithm to predict the variation effect over the protein
DataElementConceptDefFR
Algorithme pour prédire l'effet de variation sur la protéine
Specifications
Attribute
Value
FormatConceptualDomain
String
Required
optional
Usage
Attribute
Value
Examples
ConceptualDomain
ValueMeaning
LabelValueMeaning
OSIRIS:O63-1
SIFT
OSIRIS:O63-2
POLYPHEN2_HDIV
OSIRIS:O63-3
MutationTaster
Wiki pages
Pages
139
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Home
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AdverseEvent_Code
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AdverseEvent_Date
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AdverseEvent_EndDate
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AdverseEvent_Grade
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Alteration_Chromosome
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Alteration_Cytoband
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Alteration_GenomeBuild
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Alteration_GenomicStart
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Alteration_GenomicStop
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AlterationOnSample_Actionability
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AlterationOnSample_AlterationType
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AlterationOnSample_Pathogenicity
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AlterationOnSample_ProposedForOrientation
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Analysis_Code
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Analysis_Date
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Analysis_Type
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AnalysisProcess_AnalyticPipelineCode
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Annotation_AminoAcidChange
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Annotation_AminoAcidChangeType
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Annotation_DNARegionName
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Annotation_DNASequenceVariation
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Annotation_FusionPrimeEnd
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Annotation_GenomicSequenceVariation
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Annotation_MutationPredictionAlgorithm
Annotation_MutationPredictionAlgorithm
Data Element Concept
Specifications
Usage
ConceptualDomain
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Annotation_MutationPredictionScore
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Annotation_MutationPredictionValue
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Annotation_OnSplicingSite
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Annotation_PfamDomain
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Annotation_PfamId
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Annotation_ReferenceDatabase
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Annotation_ReferenceType
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Annotation_ReferenceValue
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Annotation_RNASequenceVariation
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Annotation_Strand
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Annotation_Symbol
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BiologicalSample_CollectDate
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BiologicalSample_ExternalAccession
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BiologicalSample_Nature
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BiologicalSample_Origin
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BiologicalSample_ParentExternalAccession
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BiologicalSample_StorageTemperature
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BiologicalSample_TopographyCode
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BiologicalSample_TumorCellularity
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Biomarker_Code
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Biomarker_Unit
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Biomarker_Value
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CNV_CopyNumber
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CNV_LOH
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CNV_SegmentGenomicStatus
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CNV_SegmentIntensity
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CNV_SegmentSize
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ConceptualDomain
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Consent_Date
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Consent_GeneticAnalysisAuthorization
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DataElementConcept
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Drug_Code
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Drug_Name
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FamilyCancerHistory_Parentage
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FamilyCancerHistory_TopographyCode
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Fusion_Chromosome3prime
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Fusion_Chromosome5prime
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Fusion_InFrame
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Fusion_NbSpanningPair
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Fusion_NbSplitReads
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Fusion_Point3prime
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Fusion_Point5prime
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Fusion_Type
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GeneExpression_DataType
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GeneExpression_Value
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GenomeEntity_Database
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GenomeEntity_Id
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GenomeEntity_Symbol
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GenomeEntity_Type
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How to contribute
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OmicAnalysis_AlgorithmicCellularity
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OmicAnalysis_AlgorithmicPloidy
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OmicAnalysis_NumberOfBreakPoints
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Panel_Name
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Patient_BirthDate
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Patient_CauseOfDeath
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Patient_Ethnicity
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Patient_Gender
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Patient_Id
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Patient_LastNewsDate
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Patient_LastNewsStatus
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Patient_OriginCenterId
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Patient_ProviderCenterId
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RelatedPathology_DiagnosisDate
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ResponseEvaluation_Date
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ResponseEvaluation_Status
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Technology_DateOfExperiment
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Technology_TechnicalProtocol
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TNM_M
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TNM_N
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TNM_T
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TNM_TNMType
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TNM_TNMVersion
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TNM_Type
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TNM_Version
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Treatment_ActivityCode
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Treatment_ClinicalTrialContext
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Treatment_ClinicalTrialName
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Treatment_EndDate
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Treatment_LineNumber
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Treatment_StartDate
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Treatment_SurgeryNature
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Treatment_SurgeryResectionQuality
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Treatment_Type
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TumorPathologyEvent_DiagnosisDate
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TumorPathologyEvent_EndDate
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TumorPathologyEvent_G8
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TumorPathologyEvent_HistologicalGradeType
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TumorPathologyEvent_HistologicalGradeValue
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Validation_Method
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Variant_AlternativeAllele
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Wiki Home
Objects
Patient
Consent
RelatedPathology
FamilyCancerHistory
TumorPathologyEvent
TNM
Analysis
ResponseEvaluation
Biomarker
Treatment
AdverseEvent
Drug
BiologicalSample
Technology
Panel
AnalysisProcess
OmicAnalysis
AlterationOnSample
Validation
Alteration
GenomeEntity
Fusion
CNV
Variant
Annotation
VariantInSample
GeneExpression
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