Issues

• Extreme RAM usage in small genome in RepeatModeler round-1

  bug
  Dfam-consortium/RepeatModeler#318 · Filter by author TobyBaril opened on Sep 3, 2026
  2

• RepearModeler crashes: “refiner_cons: No such file or directory”

  bug
  Dfam-consortium/RepeatModeler#316 · Filter by author masikol opened on Jul 2, 2026
  1

• Refining families...Refiner: No consensus could be derived from the input sequences

  question
  Dfam-consortium/RepeatModeler#308 · Filter by author maggiesudo opened on Apr 17, 2026
  2

• -repeatafterme_dir not working

  bug
  Dfam-consortium/RepeatModeler#307 · Filter by author christinamccosker opened on Apr 9, 2026
  1

• Repeat Modeler - Could not open *.translation file for reading

  bug
  Dfam-consortium/RepeatModeler#305 · Filter by author YanNevers opened on Jan 13, 2026
  5

• how to recover the repeatmodeler stage when it stop when running the LTRstruct

  question
  Dfam-consortium/RepeatModeler#304 · Filter by author Jiangjiangzhang6 opened on Jan 12, 2026
  4

• RepeatClassifier using wrong Libraries directory when RepeatMasker configured with -libdir

  bug
  Dfam-consortium/RepeatModeler#303 · Filter by author TobyBaril opened on Jan 7, 2026
  6

• Output from Linup has to be renamed before input to extendFlankingSeqs.pl

  bug
  Dfam-consortium/RepeatModeler#301 · Filter by author magdakmiecik opened on Dec 9, 2025
  1

• -species Viridiplantae finds no repeats

  question
  Dfam-consortium/RepeatModeler#300 · Filter by author tallnuttrbgv opened on Dec 4, 2025

• Generate consensus repeat library from multiple species

  question
  Dfam-consortium/RepeatModeler#299 · Filter by author tododge opened on Nov 19, 2025

• RepeatModeler stalls at "refining families" step

  Dfam-consortium/RepeatModeler#302 · Filter by author danielle-khost opened on Oct 8, 2025
  5

• ERROR from search engine (1)

  bug
  Dfam-consortium/RepeatModeler#296 · Filter by author Donbbit opened on Sep 28, 2025

• Feature request: Update LTR_retriever to v3.0.4

  enhancement
  Dfam-consortium/RepeatModeler#297 · Filter by author diegomics opened on Sep 26, 2025

• Does RM behave differently on softmasked input?

  question
  Dfam-consortium/RepeatModeler#295 · Filter by author Rik-149 opened on Sep 25, 2025

• Stalling on Refiner consistently in and out of TETools container

  question
  Dfam-consortium/RepeatModeler#294 · Filter by author catharazy opened on Sep 12, 2025
  2

• Problem with Dfam-Database and the RepeatClassifier function of repeat modeler

  question
  Dfam-consortium/RepeatModeler#292 · Filter by author ReiRoHo opened on Aug 14, 2025
  1

• How to best compare repeat content among genomes?

  question
  Dfam-consortium/RepeatModeler#284 · Filter by author lukaskon opened on Jun 3, 2025
  2

• Clustering...LTRPipeline: Error - could not cluster MAFFT results.

  bug
  Dfam-consortium/RepeatModeler#282 · Filter by author xiaozhuo-wang opened on May 10, 2025
  2

• Request: LTR_retriever update from version 2.9.0

  enhancement
  Dfam-consortium/RepeatModeler#257 · Filter by author ryandkuster opened on Feb 2, 2024
  1

  

• recoverDir can not recover from a failed run of the LTRPipeline

  enhancement
  Dfam-consortium/RepeatModeler#65 · Filter by author jebrosen opened on Feb 26, 2020
  15