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@Dfam-consortium

Dfam Consortium

Resources for the Study of Transposable Element Families
README.md

🧬 Dfam Consortium

Open tools and data for discovering, classifying, and annotating transposable elements and other repeats in genomes.


Rather than exploring the repositories one by one, we encourage you to explore the offerings through the Dfam Consortium Wiki. It provides a map to everything we build - what each project does, how they fit together, and where to begin.

Explore the Dfam Wiki

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  1. RepeatMasker RepeatMasker Public

    RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

    Perl 321 51

  2. RepeatModeler RepeatModeler Public

    De-Novo Repeat Discovery Tool

    Perl 248 28

  3. TETools TETools Public

    Dfam Transposable Element Tools Docker container.

    Shell 107 16

  4. FamDB FamDB Public

    FamDB file format library and utilities

    Python 52 4

  5. AlignmentSummaryViewer AlignmentSummaryViewer Public

    Multiple sequence alignment visualization component

    HTML 7

  6. RepeatMasker_Nextflow RepeatMasker_Nextflow Public

    Nextflow script for running RepeatMasker on a cluster

    Perl 6 1

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