chore: replace hatch environments with uv + ci scripts

.github/workflows/check_changelogs.yml

@@ -25,7 +25,7 @@ jobs:
         uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
 
       - name: Check zarr-python changelog entries
-        run: uv run --no-sync python ci/check_changelog_entries.py
+        run: uvx --from rust-just just check-changelogs
 
       - name: Check zarr-metadata changelog entries
-        run: uv run --no-sync python ci/check_changelog_entries.py packages/zarr-metadata/changes
+        run: uvx --from rust-just just check-changelogs packages/zarr-metadata/changes

.github/workflows/codspeed.yml

@@ -27,12 +27,17 @@ jobs:
       with:
         fetch-depth: 0
         persist-credentials: false
-    - name: Install Hatch
-      uses: pypa/hatch@257e27e51a6a5616ed08a39a408a21c35c9931bc
+    - name: Install uv
+      uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
       with:
-        version: '1.16.5'
+        enable-cache: true
+        python-version: '3.12'
+    # Pre-build the locked env so the measured `run` below is just pytest, not a
+    # cold uv sync — keeps the walltime sample clean.
+    - name: Sync locked benchmark env
+      run: uv sync --locked --no-default-groups --group test -p 3.12
     - name: Run the benchmarks
       uses: CodSpeedHQ/action@63f3e98b61959fe67f146a3ff022e4136fe9bb9c # v4.17.6
       with:
           mode: walltime
-          run: hatch run test.py3.12-minimal:pytest tests/benchmarks --codspeed
+          run: uv run --no-sync -p 3.12 pytest tests/benchmarks --codspeed

.github/workflows/docs.yml

@@ -23,13 +23,11 @@ jobs:
         with:
           persist-credentials: false
       - uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
-      - run: uv sync --group docs
-      # --strict turns warnings into errors, so a docs code block that fails to execute
-      # at build time (e.g. a non-exec python fence disrupting a later exec="true" block)
-      # fails CI instead of merging as a silent warning.
-      - run: uv run mkdocs build --strict
-        env:
-          DISABLE_MKDOCS_2_WARNING: "true"
-          NO_MKDOCS_2_WARNING: "true"
-      - run: uv run python ci/check_unlinked_types.py
+        with:
+          python-version: '3.12'
+      # `just docs-build` runs `mkdocs build --strict` (warnings are errors, so a
+      # docs code block that fails to execute at build time fails CI) against the
+      # locked docs env. check_unlinked_types runs in that same synced env.
+      - run: uvx --from rust-just just docs-build
+      - run: uvx --from rust-just just check-doc-links
         continue-on-error: true

.github/workflows/gpu_test.yml

@@ -12,8 +12,6 @@ on:
 
 env:
   LD_LIBRARY_PATH: /usr/local/cuda/extras/CUPTI/lib64:/usr/local/cuda/lib64
-  # Use the uv from astral-sh/setup-uv instead of hatch's bundled (pyapp) uv.
-  HATCH_ENV_TYPE_VIRTUAL_UV_PATH: uv
 
 permissions:
   contents: read
@@ -56,28 +54,13 @@ jobs:
         echo $PATH
         echo $LD_LIBRARY_PATH
         nvcc -V
-    - name: Set up Python
-      uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
-      with:
-        python-version: ${{ matrix.python-version }}
-        cache: 'pip'
     - name: Install uv
       uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
-    - name: Install Hatch
-      uses: pypa/hatch@257e27e51a6a5616ed08a39a408a21c35c9931bc
       with:
-        version: '1.16.5'
-    - name: Set Up Hatch Env
-      env:
-        HATCH_ENV: gputest.py${{ matrix.python-version }}
-      run: |
-        hatch env create "$HATCH_ENV"
-        hatch env run -e "$HATCH_ENV" list-env
+        enable-cache: true
+        python-version: ${{ matrix.python-version }}
     - name: Run Tests
-      env:
-        HATCH_ENV: gputest.py${{ matrix.python-version }}
-      run: |
-        hatch env run --env "$HATCH_ENV" run-coverage
+      run: uvx --from rust-just just gpu
 
     - name: Upload coverage
       uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f  # v7.0.0

.github/workflows/hypothesis.yaml

@@ -18,8 +18,6 @@ concurrency:
 
 env:
   FORCE_COLOR: 3
-  # Use the uv from astral-sh/setup-uv instead of hatch's bundled (pyapp) uv.
-  HATCH_ENV_TYPE_VIRTUAL_UV_PATH: uv
 
 jobs:
 
@@ -51,23 +49,11 @@ jobs:
         else
           echo "HYPOTHESIS_PROFILE=ci" >> $GITHUB_ENV
         fi
-    - name: Set up Python
-      uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
-      with:
-        python-version: ${{ matrix.python-version }}
-        cache: 'pip'
     - name: Install uv
       uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
-    - name: Install Hatch
-      uses: pypa/hatch@257e27e51a6a5616ed08a39a408a21c35c9931bc
       with:
-        version: '1.16.5'
-    - name: Set Up Hatch Env
-      env:
-        HATCH_ENV: test.py${{ matrix.python-version }}-${{ matrix.dependency-set }}
-      run: |
-        hatch env create "$HATCH_ENV"
-        hatch env run -e "$HATCH_ENV" list-env
+        enable-cache: true
+        python-version: ${{ matrix.python-version }}
     # https://github.com/actions/cache/blob/main/tips-and-workarounds.md#update-a-cache
     - name: Restore cached hypothesis directory
       id: restore-hypothesis-cache
@@ -81,11 +67,9 @@ jobs:
     - name: Run slow Hypothesis tests
       if: success()
       id: status
-      env:
-        HATCH_ENV: test.py${{ matrix.python-version }}-${{ matrix.dependency-set }}
       run: |
         echo "Using Hypothesis profile: $HYPOTHESIS_PROFILE"
-        hatch env run --env "$HATCH_ENV" run-hypothesis
+        uvx --from rust-just just hypothesis
 
     # explicitly save the cache so it gets updated, also do this even if it fails.
     - name: Save cached hypothesis directory

.github/workflows/lint.yml

@@ -30,4 +30,9 @@ jobs:
         uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
         with:
           enable-cache: true
+      # Fail fast if uv.lock is stale vs pyproject.toml. Every test job installs
+      # with `uv sync --locked`, so a drifted lock would otherwise only surface
+      # as a confusing failure there.
+      - name: Check uv.lock is up to date
+        run: uv lock --check
       - uses: j178/prek-action@bdca6f102f98e2b4c7029491a53dfd366469e33d # v2.0.4

.github/workflows/test.yml

@@ -13,11 +13,6 @@ on:
 permissions:
   contents: read
 
-env:
-  # Use the uv from astral-sh/setup-uv; without an explicit path hatch
-  # bootstraps its own (pyapp) uv, which fails on non-3.12 runners.
-  HATCH_ENV_TYPE_VIRTUAL_UV_PATH: uv
-
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
@@ -60,27 +55,21 @@ jobs:
       with:
         fetch-depth: 0  # grab all branches and tags
         persist-credentials: false
-    - name: Set up Python
-      uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
-      with:
-        python-version: ${{ matrix.python-version }}
-        cache: 'pip'
     - name: Install uv
       uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
-    - name: Install Hatch
-      run: python -m pip install hatch==1.16.5
-    - name: Set Up Hatch Env
-      env:
-        HATCH_ENV: test.py${{ matrix.python-version }}-${{ matrix.dependency-set }}
-      run: |
-        hatch env create "$HATCH_ENV"
-        hatch env run -e "$HATCH_ENV" list-env
+      with:
+        enable-cache: true
+        python-version: ${{ matrix.python-version }}
+    # The `just` recipe (see Justfile) runs `uv sync --locked`, so one universal
+    # uv.lock serves every os/python cell — and it fails if the lock is stale vs
+    # pyproject.toml (a cross-platform drift gate). setup-uv's python-version
+    # sets UV_PYTHON so uv picks the right interpreter. CI and local dev invoke
+    # the identical recipe; `uvx --from rust-just` provides `just` without a
+    # separate install.
     - name: Run Tests
       env:
         HYPOTHESIS_PROFILE: ci
-        HATCH_ENV: test.py${{ matrix.python-version }}-${{ matrix.dependency-set }}
-      run: |
-        hatch env run --env "$HATCH_ENV" run-coverage
+      run: uvx --from rust-just just test-${{ matrix.dependency-set }}
     - name: Upload coverage
       if: ${{ matrix.dependency-set == 'optional' && matrix.os == 'ubuntu-latest' }}
       uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f # v7.0.0
@@ -109,26 +98,16 @@ jobs:
       with:
         fetch-depth: 0
         persist-credentials: false
-    - name: Set up Python
-      uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
-      with:
-        python-version: ${{ matrix.python-version }}
-        cache: 'pip'
     - name: Install uv
       uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
-    - name: Install Hatch
-      run: python -m pip install hatch==1.16.5
-    - name: Set Up Hatch Env
-      env:
-        HATCH_ENV: ${{ matrix.dependency-set }}
-      run: |
-        hatch env create "$HATCH_ENV"
-        hatch env run -e "$HATCH_ENV" list-env
+      with:
+        enable-cache: true
+        python-version: ${{ matrix.python-version }}
+    # min_deps and upstream are intentionally unlocked (floor constraints from
+    # ci/min-deps-constraints.txt; nightly + git mains overlay). The recipe names
+    # match the matrix values — see the Justfile.
     - name: Run Tests
-      env:
-        HATCH_ENV: ${{ matrix.dependency-set }}
-      run: |
-        hatch env run --env "$HATCH_ENV" run-coverage
+      run: uvx --from rust-just just ${{ matrix.dependency-set }}
     - name: Upload coverage
       uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f # v7.0.0
       with:
@@ -144,21 +123,13 @@ jobs:
       with:
         fetch-depth: 0 # required for hatch version discovery, which is needed for numcodecs.zarr3
         persist-credentials: false
-    - name: Set up Python
-      uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
-      with:
-        python-version: '3.13'
-        cache: 'pip'
     - name: Install uv
       uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
-    - name: Install Hatch
-      run: python -m pip install hatch==1.16.5
-    - name: Set Up Hatch Env
-      run: |
-        hatch run doctest:pip list
-    - name: Run Tests
-      run: |
-        hatch run doctest:test
+      with:
+        enable-cache: true
+        python-version: '3.13'
+    - name: Run doctests
+      run: uvx --from rust-just just doctest
 
   benchmarks:
     name: Benchmark smoke test
@@ -168,18 +139,13 @@ jobs:
       with:
         fetch-depth: 0
         persist-credentials: false
-    - name: Set up Python
-      uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
-      with:
-        python-version: '3.13'
-        cache: 'pip'
     - name: Install uv
       uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
-    - name: Install Hatch
-      run: python -m pip install hatch==1.16.5
+      with:
+        enable-cache: true
+        python-version: '3.13'
     - name: Run Benchmarks
-      run: |
-        hatch env run --env "test.py3.13-minimal" run-benchmark
+      run: uvx --from rust-just just benchmark
 
   test-complete:
     name: Test complete

.gitignore

@@ -9,6 +9,7 @@ __pycache__/
 .Python
 env/
 .venv/
+.venv-min-deps/
 build/
 develop-eggs/
 dist/