v0.1.11

Small bug fixes:

1. In ViewBS NonConRate, restrict the order of samples in the output based on the input order in the command line (lib/Meth/BisNonConvRate.pm)
2. Extend the decimal places of the non-conversion rate from 3 to 5 (lib/Meth/BisNonConvRate.pm)
3. Restrict the order of the chromosomes based on the order provided in the genome fai file; Add divide line in-between chromosomes in the figure (lib/Meth/Geno.R)
4. Add #!/usr/bin/env Rscript in lib/scripts/mer_fig.R

Differences can obtained using:
git diff be30e8e2bc2707fe123123c51e76e771927e94a1 1e871bcc7a880509adf0151288e2dd4242e2e685

v0.1.10

1. Update README.md because of bioconda recipe added by @xuzhougeng
2. Update lib/Meth/OneRegion.R based on #56

v0.1.9

Fix a bug related to #43

ViewBS_v0.1.8

1. Add support for Docker and Singularity
2. Fix a bug about version information outputting.
3. Fix a bug about cpanm path: put cpanm back into ext_tools/

ViewBS_v0.1.7

Change lib/Meth/Sample.pm:

Exit 1 instead of 0 when encounter errors.

ViewBS_v0.1.6

In MethHeatmap, the program will stop running with message "Can't call method 'next' on an undefined value" for empty tabix query. It has been fixed at this version. Thanks to @lileiting .

ViewBS_v0.1.5

Changes:

1. The unit of x-axis in the figures generated by MethGeno was changed from 500 kb to 1 Mb. In the x-axis label, the unit was added.
2. Update the doc for BisNonConvRate: minDepth default value (1->5).

ViewBS_v0.1.4

Bug fix: an error message will be given if there is no information given for a region when using MethOverRegion.

ViewBS_v0.1.3

Bug fixing: lib/SubCmd/MethGeno.pm
f1f2f8d

ViewBS_v0.1.2

1. Re-write the script to install the dependencies;
2. Add a step to save figure objects into RDS files. The RDS files can be restored for combine multiple figures into one graph.
3. A help script mer_fig.R is written to combine multiple figures into one graph (https://github.com/xie186/ViewBS/wiki/How-to-merge-figures-into-one-graph).
4. Add --context for subcommand NonConversionRate
5. Add script to support BS-Seeker2 results.