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UW-Madison LOCI

Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri

34 followers
Madison, WI, USA
https://loci.wisc.edu
@UWMadisonLOCI

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curvelets curvelets Public

Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

MATLAB 28 18
loci-scripts loci-scripts Public

Scripts and macros for LOCI scientific problems

Shell
visbio-imagej visbio-imagej Public

ImageJ plugins for 3D visualization using the VisAD toolkit

Java 1
misc-plugins misc-plugins Public

Miscellaneous ImageJ plugins

Java 2 1
search-image-sc search-image-sc Public

Image.sc search service

Python

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Showing 10 of 146 repositories

EBEAM_dashboard Public
EBEAM System GUI

uw-loci/EBEAM_dashboard’s past year of commit activity

Python 7 1 21 18 Updated Jun 29, 2026
ast-net Public
A deep learning network trained to classify bacterial species from label-free data.

uw-loci/ast-net’s past year of commit activity

Rust 0 Unlicense 0 0 0 Updated Jun 29, 2026
qupath-catalog-qpsc Public
QuPath extension catalog for QPSC microscope control system

uw-loci/qupath-catalog-qpsc’s past year of commit activity

Python 0 0 0 0 Updated Jun 29, 2026
qupath-extension-tiles-to-pyramid Public
An extension to allow the creation of a pyramidal image file from individual tiles, based on known tile positions.

uw-loci/qupath-extension-tiles-to-pyramid’s past year of commit activity

Java 0 Apache-2.0 1 0 5 Updated Jun 29, 2026
qupath-catalog-mikenelson Public
QuPath extensions by Mike Nelson at LOCI

uw-loci/qupath-catalog-mikenelson’s past year of commit activity

Python 3 0 0 0 Updated Jun 29, 2026
qupath-extension-cell-analysis-tools Public
Python-powered clustering and phenotyping for highly multiplexed imaging data in QuPath

uw-loci/qupath-extension-cell-analysis-tools’s past year of commit activity

Java 4 Apache-2.0 0 1 0 Updated Jun 29, 2026
uw-loci.github.io Public
LOCI software articles

uw-loci/uw-loci.github.io’s past year of commit activity

Ruby 0 CC0-1.0 0 0 0 Updated Jun 29, 2026
Flamingo_Control Public
Controlling a Flamingo microscope from Python

uw-loci/Flamingo_Control’s past year of commit activity

Python 2 MIT 2 0 0 Updated Jun 29, 2026
flamingo-stitcher Public
Standalone light-sheet tile stitching (CLI + GUI) for Flamingo T-SPIM data, extracted from py2flamingo.

uw-loci/flamingo-stitcher’s past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Jun 29, 2026
Kepco-Dashboard Public
A material-style Dashboard for control the Kepco. With waveform generation ability

uw-loci/Kepco-Dashboard’s past year of commit activity

Python 1 0 1 2 Updated Jun 28, 2026

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