chore(deps): bump actions/upload-artifact from 4 to 7

.github/workflows/chebi.yml

@@ -260,31 +260,31 @@ jobs:
           echo "CHANGE=$change" >> $GITHUB_ENV
 
       - name: 'Upload processed data as artifacts all'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: chebi_processed
           path: datasources/chebi/recentData/*
 
       - name: 'Upload processed data as artifacts name2synonym'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: ChEBI_name2synonym.tsv
           path: datasources/chebi/recentData/ChEBI_name2synonym.tsv
 
       - name: 'Upload processed data as artifacts priIDs'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: ChEBI_priID.tsv
           path: datasources/chebi/recentData/ChEBI_priIDs.tsv
 
       - name: 'Upload processed data as artifacts secID2priID'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: ChEBI_secID2priID.tsv
           path: datasources/chebi/recentData/ChEBI_secID2priID.tsv
 
       - name: 'Upload processed data as artifacts BridgeDb file'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: ChEBI_secID2priID.bridge
           path: datasources/chebi/recentData/ChEBI_secID2priID.bridge

.github/workflows/hgnc.yml

@@ -211,19 +211,19 @@ jobs:
 
 
       - name: 'Upload processed data as artifacts all'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: hgnc_processed
           path: datasources/hgnc/recentData/*      
 
       - name: 'Upload processed data as artifacts priIDs'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: HGNC_priIDs.tsv
           path: datasources/hgnc/recentData/HGNC_priIDs.tsv
 
       - name: 'Upload processed data as artifacts secID2priID'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: HGNC_secID2priID.tsv
           path: datasources/hgnc/recentData/HGNC_secID2priID.tsv

.github/workflows/hmdb.yml

@@ -207,31 +207,31 @@ jobs:
           echo "CHANGE=$change" >> $GITHUB_ENV 
 
       - name: 'Upload processed data as artifacts all'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: hmdb_processed
           path: datasources/hmdb/recentData/*
 
       - name: 'Upload processed data as artifacts priIDs'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: HMDB_priIDs.tsv
           path: datasources/hmdb/recentData/HMDB_priIDs.tsv
 
       - name: 'Upload processed data as artifacts secID2priID'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: HMDB_secID2priID.tsv
           path: datasources/hmdb/recentData/HMDB_secID2priID.tsv
 
       - name: 'Upload processed data as artifacts name2synonym'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: HMDB_name2synonym.tsv
           path: datasources/hmdb/recentData/HMDB_name2synonym.tsv
 
       - name: 'Upload processed data as artifacts bridgeDb file'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: HMDB_secID2priID.bridge
           path: datasources/hmdb/recentData/HMDB_secID2priID.bridge

.github/workflows/ncbi.yml

@@ -201,25 +201,25 @@ jobs:
           echo "CHANGE=$change" >> $GITHUB_ENV 
 
       - name: 'Upload processed data as artifacts all'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: ncbi_processed
           path: datasources/ncbi/recentData/*
 
       - name: 'Upload processed data as artifacts priIDs'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: NCBI_priIDs.tsv
           path: datasources/ncbi/recentData/NCBI_priIDs.tsv
 
       - name: 'Upload processed data as artifacts secID2priIDs'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: NCBI_secID2priID.tsv
           path: datasources/ncbi/recentData/NCBI_secID2priID.tsv
 
       - name: 'Upload processed data as artifacts bridgedb file'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: NCBI_secID2priID.bridge
           path: datasources/ncbi/recentData/NCBI_secID2priID.bridge

.github/workflows/sssom2rdf.yml

@@ -81,7 +81,7 @@ jobs:
           done
 
       - name: Upload RDF files for next job
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: intermediate_rdf
           path: datasources/**/mappings/*.ttl
@@ -125,7 +125,7 @@ jobs:
           path: mappings
 
       - name: Upload RDF Turtle files as artifact
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: all_sssom_rdf
           path: mappings/**/*.ttl

.github/workflows/uniprot.yml

@@ -174,19 +174,19 @@ jobs:
 
 
       - name: 'Upload processed data as artifacts all'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: uniprot_processed
           path: datasources/uniprot/recentData/*
 
       - name: 'Upload processed data as artifacts priIDs'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: UniProt_priIDs.tsv
           path: datasources/uniprot/recentData/UniProt_priIDs.tsv
 
       - name: 'Upload processed data as artifacts secID2priID'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: UniProt_secID2priID.tsv
           path: datasources/uniprot/recentData/UniProt_secID2priID.tsv    

.github/workflows/wikidata.yml

@@ -124,43 +124,43 @@ jobs:
 
       # step 4: compare the new and old data and upload as artifact
       - name: 'Upload processed data as artifacts all'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: wikidata_processed
           path: datasources/wikidata/recentData/
 
       - name: 'Upload processed data as artifacts metabolites all mappings'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: Wikidata_secID2priID_metabolites.tsv
           path: datasources/wikidata/recentData/Wikidata_secID2priID_metabolites.tsv
 
       - name: 'Upload processed data as artifacts metabolites primary IDs'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: Wikidata_priIDs_metabolites.tsv
           path: datasources/wikidata/recentData/Wikidata_priIDs_metabolites.tsv
 
       - name: 'Upload processed data as artifacts protein'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: Wikidata_secID2priID_protein.tsv
           path: datasources/wikidata/recentData/Wikidata_secID2priID_protein.tsv
 
       - name: 'Upload processed data as artifacts protein primary IDs'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: Wikidata_priIDs_protein.tsv
           path: datasources/wikidata/recentData/Wikidata_priIDs_protein.tsv
 
       - name: 'Upload processed data as artifacts gene'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: Wikidata_secID2priID_gene.tsv
           path: datasources/wikidata/recentData/Wikidata_secID2priID_gene.tsv
 
       - name: 'Upload processed data as artifacts gene primary IDs'
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: Wikidata_priIDs_gene.tsv
           path: datasources/wikidata/recentData/Wikidata_priIDs_gene.tsv