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Publish ARIBA Galaxy wrapper to the main Galaxy Tool Shed

Status: Open.

#348 In sanger-pathogens/ariba;

· SaimMomin12 opened on Mar 25, 2026

can ariba be run with one seq file and not 2

Status: Open.

#346 In sanger-pathogens/ariba;

· Julian-marchesi opened on Nov 21, 2024

Error in generating PubMLST database with ariba pubmlstget: Missing gene-specific .tfa files

Status: Open.

#344 In sanger-pathogens/ariba;

· jimmlucas opened on Nov 8, 2024

Resfinder -- interpretation

Status: Open.

#343 In sanger-pathogens/ariba;

· ZainBioBytes opened on Oct 15, 2024

Bowtie2 ERROR

Status: Open.

#341 In sanger-pathogens/ariba;

· Mx-Chpl opened on Aug 8, 2024

Change "pubmlstspecies" source url

Status: Open.

#340 In sanger-pathogens/ariba;

· Nilad opened on Oct 24, 2023

Test run seems to not work properly

Status: Open.

#338 In sanger-pathogens/ariba;

· marcellobeltrami opened on Jun 22, 2023

How to determine SNP frequency in multi-copy genes (e.g., 23S rRNA).

Status: Open.

#337 In sanger-pathogens/ariba;

· slvrshot opened on Jun 13, 2023

Long read compatibility by tweaking the pipeline

Status: Open.

#332 In sanger-pathogens/ariba;

· varun8476 opened on Feb 14, 2023

VFDB contains few genes that are not part of any cluster

Status: Open.

#331 In sanger-pathogens/ariba;

· PovilasMat opened on Feb 10, 2023

Failed cluster: cluster

Status: Open.

#330 In sanger-pathogens/ariba;

· Iqrarshad opened on Jan 30, 2023

Filter Bad MLST Profiles from PubMLST

Status: Open.

#328 In sanger-pathogens/ariba;

· Nilad opened on Aug 18, 2022