Repositories list

• colopaint3D

  Public
  Supporting scripts and code for Cell Painting in 3D spheroids

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 9, 2026Sep 9, 2026

• cage2_automation

  Public
  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 7, 2026Sep 7, 2026

• repuragent-web

  Public
  AI Agent for Drug Repurposing

  Jupyter Notebook

  •11 fork•22 stars•00 issues•00 pull requests•Updated Sep 4, 2026Sep 4, 2026

• chemsafe-agent

  Public
  AI Agent for Chemical Safety

  Python

  •00 forks•33 stars•00 issues•00 pull requests•Updated Sep 4, 2026Sep 4, 2026

• repuragent

  Public
  Multi-agentic AI system for Drug Repurposing

  Python

  •33 forks•2222 stars•00 issues•00 pull requests•Updated Sep 3, 2026Sep 3, 2026

• sarscov2-phenomics-repurposing

  Public
  This repository contains code and data associated with the manuscript "Morphological cell profiling for drug repurposing against SARS-CoV-2 infection"

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 3, 2026Sep 3, 2026

• SphereDetect

  Public
  Implementation of algorithm to automatically detect spheroid base Z plane in multiwell microscopy.

  Jupyter Notebook

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 19, 2026Aug 19, 2026

• pharmbio-web

  Public
  The Static (Hugo) website for pharmb.io

  JavaScript

  •77 forks•33 stars•00 issues•44 pull requests•Updated Aug 18, 2026Aug 18, 2026

• big-data_course

  Public
  Material for the Big Data in life science course

  TeX

  •33 forks•44 stars•00 issues•00 pull requests•Updated Aug 17, 2026Aug 17, 2026

• echa-chem-mcp-skill

  Public
  MCP server and agent skill for ECHA CHEM database

  Python

  •00 forks•11 star•11 issue•00 pull requests•Updated Jul 8, 2026Jul 8, 2026

• robotlab

  Public
  Cell painting and imaging with robots

  Python

  •

  MIT License

  •11 fork•1212 stars•44 issues•00 pull requests•Updated Jun 29, 2026Jun 29, 2026

• plaid-gui

  Public
  constraint-satisfaction-problemartificial-intelligenceconstraint-programming+ 5

  constraint-satisfaction-problemartificial-intelligenceconstraint-programmingplaidexperimental-designmicroplatemicroplate-layout-designmicroplate-design

  JavaScript

  •

  Apache License 2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 10, 2026Jun 10, 2026

• plaid

  Public
  PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.

  artificial-intelligenceconstraint-programmingplaid+ 3

  artificial-intelligenceconstraint-programmingplaidexperimental-designmicroplate-designmultiplate-layout-design

  Jupyter Notebook

  •

  Apache License 2.0

  •55 forks•2020 stars•00 issues•22 pull requests•Updated Jun 10, 2026Jun 10, 2026

• pipelinegui

  Public
  JavaScript

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jun 9, 2026Jun 9, 2026

• imagedb

  Public
  Image database for pharmbio microscope images

  JavaScript

  •00 forks•55 stars•99 issues•33 pull requests•Updated Jun 5, 2026Jun 5, 2026

• cppipeline2

  Public
  version 2 of cppipeline

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2026Jun 1, 2026

• cplogd

  Public
  Code related to the conformal prediction log D project

  CSS

  •11 fork•22 stars•00 issues•33 pull requests•Updated May 21, 2026May 21, 2026

• pharmbio-notebook

  Public
  Docker containers for interactive notebook environments for rancher cluster

  Dockerfile

  •11 fork•22 stars•00 issues•11 pull request•Updated May 20, 2026May 20, 2026

• namnlapp

  Public
  Namnlapp till kontoret på BMC

  22 forks•00 stars•00 issues•00 pull requests•Updated May 19, 2026May 19, 2026

• big-data_deeplearning

  Public
  Big data course, Deep learning repo

  Jupyter Notebook

  •11 fork•44 stars•00 issues•00 pull requests•Updated May 6, 2026May 6, 2026

• squid

  Public
  C

  •5656 forks•33 stars•66 issues•11 pull request•Updated Apr 10, 2026Apr 10, 2026

• s3uploader

  Public
  service that uploads images to s3

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 2, 2026Mar 2, 2026

• cp_pipeline

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 19, 2026Feb 19, 2026

• specs-mcp-server

  Public
  MCP server for SPECS dataset

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 16, 2025Dec 16, 2025

• ULLA_AIinDD

  Public
  ULLA AI in Drug Discovery course material

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 17, 2025Nov 17, 2025

• DeepLearningTutorials

  Public
  Deep Learning Notebooks adapted for some of our courses by David Holmberg - including PB_SEQ, ULLA, Ai4DD etc

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 9, 2025Nov 9, 2025

• lmm-student

  Public
  Deep Learning Notebooks adapted for some of our courses by David Holmberg - including PB_SEQ, ULLA, Ai4DD etc

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 6, 2025Nov 6, 2025

• helm-charts

  Public
  Mustache

  •00 forks•11 star•11 issue•00 pull requests•Updated Aug 26, 2025Aug 26, 2025

• pharmbio_LaTeX_templates

  Public
  A series of LaTeX templates used by us

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 24, 2025Jul 24, 2025

• sc_celldeath

  Public
  Analysis scripts for single-cell celldeath publication

  Jupyter Notebook

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jun 2, 2025Jun 2, 2025