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@Taming-the-BEAST Taming the BEAST

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    40 repositories

    • Visualizing-BEAST2-results

      Public
      Tutorial on visualising results from BEAST2 analyses.
      TeX
      •0•1•0•1•Updated Aug 27, 2026Aug 27, 2026

    • Substitution-model-averaging

      Public
      A tutorial using bModelTest
      TeX
      •
      Creative Commons Attribution 4.0 International
      •4•3•0•1•Updated Aug 27, 2026Aug 27, 2026

    • Structured-birth-death-model

      Public
      Population structure using the multi-type birth-death model
      TeX
      •5•0•0•1•Updated Aug 27, 2026Aug 27, 2026

    • Structured-coalescent

      Public
      Population structure using MultiTypeTree
      TeX
      •
      GNU General Public License v3.0
      •3•2•1•1•Updated Aug 27, 2026Aug 27, 2026

    • StarBeast3-Tutorial

      Public
      TeX
      •0•0•0•1•Updated Aug 27, 2026Aug 27, 2026

    • Skyline-plots

      Public
      Inference of past population dynamics using Bayesian Coalescent Skyline and Birth-Death Skyline plots.
      HTML
      •
      Creative Commons Attribution 4.0 International
      •5•9•4•1•Updated Aug 27, 2026Aug 27, 2026

    • SCOTTI-Tutorial

      Public
      Transmission tree reconstruction with the structured coalescent
      Python
      •
      Creative Commons Attribution 4.0 International
      •3•8•3•1•Updated Aug 27, 2026Aug 27, 2026

    • Prior-selection

      Public
      Prior selection and clock calibration using Influenza A data
      TeX
      •
      Creative Commons Attribution 4.0 International
      •4•1•3•1•Updated Aug 27, 2026Aug 27, 2026

    • Molecular-clock-dating-and-modelling-rate-variation

      Public
      Accounting for evolutionary rate variation in passerine birds
      TeX
      •0•1•0•1•Updated Aug 27, 2026Aug 27, 2026

    • Molecular-Dating-Tutorial

      Public
      TeX
      •2•2•1•1•Updated Aug 27, 2026Aug 27, 2026

    • Mascot-Tutorial

      Public
      Tutorial on how to set-up a Mascot analysis
      TeX
      •
      Creative Commons Attribution 4.0 International
      •6•1•0•1•Updated Aug 27, 2026Aug 27, 2026

    • FBD-tutorial

      Public
      Dating Species Divergences with the Fossilized Birth-Death Process
      TeX
      •9•6•1•1•Updated Aug 27, 2026Aug 27, 2026

    • Bacter-Tutorial

      Public
      Taming the BEAST Tutorial for Bacter
      TeX
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•1•Updated Aug 27, 2026Aug 27, 2026

    • Troubleshooting-initialization-issues

      Public
      TeX
      •0•1•0•1•Updated Aug 27, 2026Aug 27, 2026

    • Troubleshooting-convergence-issues

      Public
      Post-processing and improving performance
      TeX
      •
      Creative Commons Attribution 4.0 International
      •4•0•0•1•Updated Aug 27, 2026Aug 27, 2026

    • Introduction-to-BEAST2

      Public
      This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.
      TeX
      •
      Creative Commons Attribution 4.0 International
      •7•11•3•1•Updated Aug 27, 2026Aug 27, 2026

    • Taming-the-BEAST.github.io

      Public
      Latest build of the Taming the BEAST website
      HTML
      •6•7•0•0•Updated Aug 27, 2026Aug 27, 2026

    • blotter

      Public
      Website source code
      SCSS
      •3•0•4•1•Updated Aug 27, 2026Aug 27, 2026

    • web-testing

      Public
      Testing the containerised website build
      HTML
      •0•0•1•0•Updated Aug 27, 2026Aug 27, 2026

    • blotter_test

      Public
      Website source code
      SCSS
      •3•0•0•0•Updated Aug 27, 2026Aug 27, 2026

    • Structured-birth-death-BDMM-Prime

      Public
      Adaption of Denise and Julija's TTB BDMM tutorial to BDMM-Prime
      TeX
      •0•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • Taming-the-BEAST-2025-Beijing-Lectures

      Public
      Repository for lectures held at the 2025 TTB workshop at the IVPP in Beijing, China.
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Jul 17, 2025Jul 17, 2025

    • Continuous-trait-evolution

      Public
      TeX
      •0•0•0•0•Updated Jul 13, 2025Jul 13, 2025

    • Squamish-BEAST-Tamers-2023-Lectures

      Public
      Repository for lectures held at the 2023 TTB workshop in Squamish, British Columbia.
      Creative Commons Attribution 4.0 International
      •1•8•0•0•Updated Aug 22, 2023Aug 22, 2023

    • Tutorial-Template

      Public template
      Template for an empty tutorial
      TeX
      •1•1•0•0•Updated Jun 9, 2023Jun 9, 2023

    • Taming-the-BEAST-2021-Online-Lectures

      Public
      Lecture slides from Taming the BEAST 2021 Online
      1•1•1•0•Updated Jun 11, 2021Jun 11, 2021

    • Taming-the-BEAST-2019-Eh-Lectures

      Public
      Repository for lectures held at the 2019 TTB workshop in Squamish, British Columbia.
      Creative Commons Attribution 4.0 International
      •4•3•0•0•Updated Aug 23, 2019Aug 23, 2019

    • Taming-the-BEAST-2018-Oberaegeri-Lectures

      Public
      Lecture slides of Taming the BEAST 2018 in Oberägeri, Switzerland
      Creative Commons Attribution 4.0 International
      •0•2•0•0•Updated Aug 22, 2019Aug 22, 2019

    • Taming-the-BEAST-2019-Sydney-Lectures

      Public
      Repository for lectures held at the 2019 TTB workshop at the University of Sydney.
      2•1•0•0•Updated Feb 25, 2019Feb 25, 2019

    • TechnicalLectureSources

      Public
      This repository will hold source files for the technical lectures given as part of TTB workshops.
      JavaScript
      •0•0•0•0•Updated Jan 30, 2019Jan 30, 2019
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