Repositories list

• MultimetricST

  Public
  A Multi-Perspective Evaluation of Spatial Transcriptomics Clustering Methods

  Python

  •11 fork in InfOmics/MultimetricST•00 stars in InfOmics/MultimetricST•00 issues in InfOmics/MultimetricST•00 pull requests in InfOmics/MultimetricST•Updated Oct 12, 2026Oct 12, 2026

• ReCAST

  Public
  Jupyter Notebook

  •

  Other

  •11 fork in InfOmics/ReCAST•00 stars in InfOmics/ReCAST•00 issues in InfOmics/ReCAST•00 pull requests in InfOmics/ReCAST•Updated Oct 8, 2026Oct 8, 2026

• MDR-RA-Opal-DataSHIELD-documentation

  Public
  R

  •

  GNU General Public License v3.0

  •00 forks in InfOmics/MDR-RA-Opal-DataSHIELD-documentation•00 stars in InfOmics/MDR-RA-Opal-DataSHIELD-documentation•00 issues in InfOmics/MDR-RA-Opal-DataSHIELD-documentation•00 pull requests in InfOmics/MDR-RA-Opal-DataSHIELD-documentation•Updated Sep 22, 2026Sep 22, 2026

• CRISPR-HAWK

  Public
  Variant- and Haplotype-aware CRISPR guide design toolkit

  Python

  •

  Other

  •55 forks in InfOmics/CRISPR-HAWK•00 stars in InfOmics/CRISPR-HAWK•00 issues in InfOmics/CRISPR-HAWK•00 pull requests in InfOmics/CRISPR-HAWK•Updated Aug 24, 2026Aug 24, 2026

• PANPROVA

  Public
  PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies

  C++

  •

  MIT License

  •00 forks in InfOmics/PANPROVA•1010 stars in InfOmics/PANPROVA•00 issues in InfOmics/PANPROVA•00 pull requests in InfOmics/PANPROVA•Updated Jun 14, 2026Jun 14, 2026

• GIST

  Public
  Leveraging Graph Information for Spatially Informed Patient Data Analysis with GIST

  Python

  •22 forks in InfOmics/GIST•00 stars in InfOmics/GIST•00 issues in InfOmics/GIST•00 pull requests in InfOmics/GIST•Updated May 5, 2026May 5, 2026

• CRISPRme

  Public
  Python

  •

  Other

  •1010 forks in InfOmics/CRISPRme•22 stars in InfOmics/CRISPRme•00 issues in InfOmics/CRISPRme•00 pull requests in InfOmics/CRISPRme•Updated Apr 28, 2026Apr 28, 2026

• APDB

  Public
  HTML

  •

  MIT License

  •22 forks in InfOmics/APDB•00 stars in InfOmics/APDB•00 issues in InfOmics/APDB•00 pull requests in InfOmics/APDB•Updated Apr 4, 2026Apr 4, 2026

• spatial_ss

  Public
  Spatial siloutte score for spatial transcriptomics

  Jupyter Notebook

  •00 forks in InfOmics/spatial_ss•00 stars in InfOmics/spatial_ss•00 issues in InfOmics/spatial_ss•00 pull requests in InfOmics/spatial_ss•Updated Mar 16, 2026Mar 16, 2026

• APBIO

  Public
  Jupyter Notebook

  •

  MIT License

  •11 fork in InfOmics/APBIO•00 stars in InfOmics/APBIO•00 issues in InfOmics/APBIO•00 pull requests in InfOmics/APBIO•Updated Dec 23, 2025Dec 23, 2025

• InfOmics

  Public
  InfOmics website

  SCSS

  •33 forks in InfOmics/InfOmics•11 star in InfOmics/InfOmics•00 issues in InfOmics/InfOmics•00 pull requests in InfOmics/InfOmics•Updated Oct 17, 2025Oct 17, 2025

• PWM-SVM-benchmark

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks in InfOmics/PWM-SVM-benchmark•22 stars in InfOmics/PWM-SVM-benchmark•00 issues in InfOmics/PWM-SVM-benchmark•00 pull requests in InfOmics/PWM-SVM-benchmark•Updated Aug 13, 2025Aug 13, 2025

• GDD-BERT

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks in InfOmics/GDD-BERT•00 stars in InfOmics/GDD-BERT•00 issues in InfOmics/GDD-BERT•00 pull requests in InfOmics/GDD-BERT•Updated Nov 28, 2024Nov 28, 2024

• EasyCircR

  Public
  Perl

  •

  MIT License

  •00 forks in InfOmics/EasyCircR•11 star in InfOmics/EasyCircR•00 issues in InfOmics/EasyCircR•00 pull requests in InfOmics/EasyCircR•Updated Nov 5, 2024Nov 5, 2024

• PanDelos-frags

  Public
  A version of PanDelos that discovers pangenomic content in fragmented genomes

  Java

  •

  MIT License

  •00 forks in InfOmics/PanDelos-frags•11 star in InfOmics/PanDelos-frags•00 issues in InfOmics/PanDelos-frags•00 pull requests in InfOmics/PanDelos-frags•Updated Sep 13, 2024Sep 13, 2024

• PanDelos

  Public
  A dictionary-based method for pan-genomic contents discovery.

  Java

  •

  MIT License

  •33 forks in InfOmics/PanDelos•33 stars in InfOmics/PanDelos•00 issues in InfOmics/PanDelos•00 pull requests in InfOmics/PanDelos•Updated Nov 24, 2023Nov 24, 2023

• ADAIR-Project

  Public
  This repository contains the scripts used within ADAIR, an EU Joint Programme - Neurodegenerative Disease Research (JPND) project. This research was supported b…

  R

  •00 forks in InfOmics/ADAIR-Project•00 stars in InfOmics/ADAIR-Project•00 issues in InfOmics/ADAIR-Project•00 pull requests in InfOmics/ADAIR-Project•Updated Oct 13, 2023Oct 13, 2023

• Esearch3D

  Public
  R

  •

  MIT License

  •33 forks in InfOmics/Esearch3D•44 stars in InfOmics/Esearch3D•00 issues in InfOmics/Esearch3D•11 pull request in InfOmics/Esearch3D•Updated Apr 19, 2023Apr 19, 2023

• DiGAS

  Public
  A novel computational model for identifying genomic elements (from single exon to entire genomic regions) that are linked to a given phenotypic condition (i.e.…

  snpsgenomics

  snpsgenomics

  Python

  •

  MIT License

  •00 forks in InfOmics/DiGAS•00 stars in InfOmics/DiGAS•00 issues in InfOmics/DiGAS•00 pull requests in InfOmics/DiGAS•Updated Mar 15, 2023Mar 15, 2023

• PanDelos-frags-SUPP

  Public
  This repository contains scripts to run the analyses performed in the methodological paper PanDelos-frags (tool available at InfOmics/PanDelos-frags)

  Jupyter Notebook

  •00 forks in InfOmics/PanDelos-frags-SUPP•00 stars in InfOmics/PanDelos-frags-SUPP•00 issues in InfOmics/PanDelos-frags-SUPP•00 pull requests in InfOmics/PanDelos-frags-SUPP•Updated Mar 7, 2023Mar 7, 2023

• RI

  Public
  RI is a general purpose algorithm for one-to-one exact subgraph isomorphism problem maintaining topological constraints.

  C++

  •

  Other

  •1111 forks in InfOmics/RI•2121 stars in InfOmics/RI•11 issue in InfOmics/RI•11 pull request in InfOmics/RI•Updated Jul 11, 2022Jul 11, 2022

• stardust

  Public
  R

  •

  MIT License

  •22 forks in InfOmics/stardust•33 stars in InfOmics/stardust•11 issue in InfOmics/stardust•00 pull requests in InfOmics/stardust•Updated Apr 27, 2022Apr 27, 2022

• FocusSearchCpp

  Public
  C++ implementation of FocusSearch (originally implemented in Modula2 by Ullmann)

  C++

  •

  MIT License

  •33 forks in InfOmics/FocusSearchCpp•22 stars in InfOmics/FocusSearchCpp•00 issues in InfOmics/FocusSearchCpp•00 pull requests in InfOmics/FocusSearchCpp•Updated Apr 27, 2022Apr 27, 2022

• rCASC

  Public
  rCASC: reproducible Classification Analysis of Single Cell Sequencing Data

  R

  •

  GNU General Public License v3.0

  •88 forks in InfOmics/rCASC•00 stars in InfOmics/rCASC•00 issues in InfOmics/rCASC•00 pull requests in InfOmics/rCASC•Updated Apr 24, 2022Apr 24, 2022

• Simpati

  Public
  Pathway-based classifier exploits patient similarity network paradigm for interpretability and explainability

  R

  •

  Other

  •22 forks in InfOmics/Simpati•00 stars in InfOmics/Simpati•00 issues in InfOmics/Simpati•00 pull requests in InfOmics/Simpati•Updated Jan 26, 2022Jan 26, 2022

• CRISPRitz

  Public
  Tool package to perform in-silico CRISPR analysis and assessment

  Python

  •

  Other

  •1010 forks in InfOmics/CRISPRitz•44 stars in InfOmics/CRISPRitz•00 issues in InfOmics/CRISPRitz•00 pull requests in InfOmics/CRISPRitz•Updated Nov 17, 2021Nov 17, 2021

• TEDAR

  Public
  Detection of adverse drug reactions in pharmacovigilance spontaneous reports

  Jupyter Notebook

  •

  MIT License

  •00 forks in InfOmics/TEDAR•00 stars in InfOmics/TEDAR•00 issues in InfOmics/TEDAR•00 pull requests in InfOmics/TEDAR•Updated Sep 16, 2021Sep 16, 2021

• MUVIG

  Public
  Imaging genetics workflow to find Parkinson's Disease potential genetic biomarkers.

  rjupyter-notebook

  rjupyter-notebook

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks in InfOmics/MUVIG•22 stars in InfOmics/MUVIG•00 issues in InfOmics/MUVIG•00 pull requests in InfOmics/MUVIG•Updated Aug 24, 2021Aug 24, 2021

• MiningPDGeneticsImagingTutorial

  Public
  ICHI 2021 Tutorial - Mining genetic, transcriptomic, and imaging data in Parkinson’s disease

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks in InfOmics/MiningPDGeneticsImagingTutorial•00 stars in InfOmics/MiningPDGeneticsImagingTutorial•00 issues in InfOmics/MiningPDGeneticsImagingTutorial•00 pull requests in InfOmics/MiningPDGeneticsImagingTutorial•Updated Aug 11, 2021Aug 11, 2021

• GRAFIMO

  Public
  Graph-based Finding of Individual Motif Occurrences

  Python

  •

  MIT License

  •00 forks in InfOmics/GRAFIMO•55 stars in InfOmics/GRAFIMO•00 issues in InfOmics/GRAFIMO•00 pull requests in InfOmics/GRAFIMO•Updated Jul 6, 2021Jul 6, 2021