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Add a Ribo-TISH fixture with colon-qualified TisType values #2208

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Merged
FelixKrueger merged 2 commits into from
Aug 10, 2026
+65 −8
Merged

Add a Ribo-TISH fixture with colon-qualified TisType values #2208

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8f56558
Add a Ribo-TISH fixture covering colon-qualified TisType values
FelixKrueger Aug 9, 2026
e2aaba9
Document the extended-ORF Ribo-TISH fixture in both READMEs
FelixKrueger Aug 10, 2026
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15 changes: 15 additions & 0 deletions ...nomics/homo_sapiens/riboseq_expression/orf_predictions/sample1.ribotish.extended.pred.txt
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Original file line number Diff line number Diff line change
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Gid Tid Symbol GeneType GenomePos StartCodon Start Stop TisType TISGroup TISCounts TISPvalue RiboPvalue RiboPStatus FisherPvalue TISQvalue FrameQvalue FisherQvalue AALen
ENSG00000088832 ENST00000677937 FKBP1A protein_coding 20:1372111-1392903:- ATG 135 447 Novel:CDSFrameOverlap 0 0 None 0.01045891220436919 T None None 0.008669308713579512 None 103
ENSG00000125863 ENST00000347364 MKKS protein_coding 20:10420545-10420737:- ATG 136 328 5'UTR:Known 0 0 None 0.011162037836675912 T None None 0.009183430665627096 None 63
ENSG00000125863 ENST00000347364 MKKS protein_coding 20:10420545-10420692:- ATG 181 328 5'UTR:CDSFrameOverlap 0 0 None 0.037141070338459446 N None None 0.024981455883948636 None 48
ENSG00000289720 ENST00000696979 protein_coding 20:34534647-34540624:+ ATG 2972 3164 3'UTR:CDSFrameOverlap 0 0 None 0.004346450743587745 N None None 0.003999095572590074 None 63
ENSG00000244005 ENST00000374092 NFS1 protein_coding 20:35669621-35674542:- ATG 1087 1438 Truncated:Known 0 0 None 0.0006960307379439676 N None None 0.0007930992920145594 None 116
ENSG00000101017 ENST00000695669 CD40 protein_coding 20:46118343-46123418:+ ATG 73 769 Novel:Known 0 0 None 0.006682042341578261 T None None 0.0057399520695824895 None 231
ENSG00000026036 ENST00000492259 RTEL1-TNFRSF6B protein_coding 20:63690293-63695785:+ ATG 2328 3723 Internal:CDSFrameOverlap 0 0 None 0.016524496926863717 T None None 0.012536556718583385 None 464
ENSG00000196476 ENST00000360321 C20orf96 protein_coding 20:271206-290610:- ATG 140 1232 Annotated 0 0 None 0.03998989937315105 N None None 0.02666494606566258 None 363
ENSG00000196476 ENST00000360321 C20orf96 protein_coding 20:271206-289586:- ATG 299 1232 Truncated 0 0 None 0.0399780718546241 T None None 0.02666494606566258 None 310
ENSG00000215388 ENST00000431775 ACTG1P3 processed_pseudogene 20:1160583-1160901:+ ATG 0 318 Novel 0 0 None 0.04464398440956175 N None None 0.029305362590948902 None 105
ENSG00000101224 ENST00000245960 CDC25B protein_coding 20:3805975-3806113:+ ATG 2979 3117 3'UTR 0 0 None 0.04689458029515801 T None None 0.030714477600042533 None 46
ENSG00000178726 ENST00000377103 THBD protein_coding 20:23047776-23049672:- ATG 0 1896 Extended 0 0 None 2.1818407880632916e-07 N None None 6.479738219826158e-07 None 631
ENSG00000171552 ENST00000450273 BCL2L1 protein_coding 20:31722270-31723776:- ATG 196 316 5'UTR 0 0 None 0.010557079266845102 T None None 0.008746589504727273 None 39
ENSG00000124145 ENST00000372733 SDC4 protein_coding 20:45327205-45327334:- ATG 566 695 Internal 0 0 None 0.02707341799961499 T None None 0.019624354093751996 None 42