Skip to content

Add reproducible GWAS fixtures and relational manifests - #2198

Open
lyh970817 wants to merge 2 commits into
nf-core:gwasfrom
lyh970817:feat/gwas-first-release-fixtures
Open

Add reproducible GWAS fixtures and relational manifests#2198
lyh970817 wants to merge 2 commits into
nf-core:gwasfrom
lyh970817:feat/gwas-first-release-fixtures

Conversation

@lyh970817

Copy link
Copy Markdown

Adds a reproducible Nextflow workflow for generating compact GWAS test data across all 22 autosomes. The generated fixtures provide PLINK 1, PLINK 2 and indexed VCF representations together with quantitative and binary phenotypes, covariates and generation provenance.

Also adds relational cohort and analysis manifests, heterogeneous method options, and their small GCTA and LDAK resource files for use by nf-core/gwas.

@lyh970817
lyh970817 force-pushed the feat/gwas-first-release-fixtures branch from fe758d3 to dc90bde Compare August 4, 2026 17:41
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant