Skip to content

Add minimal test data for pcangsd/inbreeding process - #2194

Merged
ASendellPrice merged 1 commit into
nf-core:modulesfrom
ASendellPrice:pcangsd_inbreeding
Aug 3, 2026
Merged

Add minimal test data for pcangsd/inbreeding process#2194
ASendellPrice merged 1 commit into
nf-core:modulesfrom
ASendellPrice:pcangsd_inbreeding

Conversation

@ASendellPrice

Copy link
Copy Markdown

Adds minimal test data required for the pcangsd/inbreeding module (nf-core/modules#12496), in advance of the module PR.

File added:

  • data/delete_me/pcangsd/FIN.beagle.gz - beagle format genotype likelihood file (limited to 1400000-1500000bp region of chr20). Contains genotype likelihoods for four Finnish samples (HG00349, HG00358, HG00350, HG00351) from the 1000 Genomes Project. File generated using angsd.

@ASendellPrice ASendellPrice self-assigned this Aug 2, 2026

@erikrikarddaniel erikrikarddaniel left a comment

Copy link
Copy Markdown
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I have no idea if this is as small as it could be, but 2.2 MiB sounds pretty large.
I'll approve anyway not to stall you.

@ASendellPrice
ASendellPrice merged commit 7a9b4b1 into nf-core:modules Aug 3, 2026
2 checks passed
@ASendellPrice
ASendellPrice deleted the pcangsd_inbreeding branch August 3, 2026 16:18
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants