Add minimal test data for pcangsd/inbreeding process - #2194
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erikrikarddaniel
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Aug 3, 2026
erikrikarddaniel
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I have no idea if this is as small as it could be, but 2.2 MiB sounds pretty large.
I'll approve anyway not to stall you.
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Adds minimal test data required for the pcangsd/inbreeding module (nf-core/modules#12496), in advance of the module PR.
File added:
data/delete_me/pcangsd/FIN.beagle.gz- beagle format genotype likelihood file (limited to 1400000-1500000bp region of chr20). Contains genotype likelihoods for four Finnish samples (HG00349, HG00358, HG00350, HG00351) from the 1000 Genomes Project. File generated using angsd.