Skip to content

Update ensemblvep modules (vep, filtervep, download) to 116.1 - #12604

Merged
ramprasadn merged 6 commits into
nf-core:masterfrom
ramprasadn:bumpvep116.1
Aug 10, 2026
Merged

Update ensemblvep modules (vep, filtervep, download) to 116.1#12604
ramprasadn merged 6 commits into
nf-core:masterfrom
ramprasadn:bumpvep116.1

Conversation

@ramprasadn

Copy link
Copy Markdown
Contributor

Bumps ensembl-vep from 116.0 to 116.1 across all three ensemblvep modules (vep, filtervep, download):

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@ramprasadn
ramprasadn requested a review from maxulysse as a code owner August 6, 2026 12:31
@ramprasadn
ramprasadn marked this pull request as draft August 6, 2026 13:04
@ramprasadn

Copy link
Copy Markdown
Contributor Author

@nf-core-bot fix linting

@ramprasadn
ramprasadn marked this pull request as ready for review August 10, 2026 07:44

@erikrikarddaniel erikrikarddaniel left a comment

Copy link
Copy Markdown
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

👍

@ramprasadn
ramprasadn added this pull request to the merge queue Aug 10, 2026
Merged via the queue into nf-core:master with commit e308fe1 Aug 10, 2026
63 checks passed
@ramprasadn
ramprasadn deleted the bumpvep116.1 branch August 10, 2026 07:56
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants