Code review for #52 - #68

Merged

nickp60 merged 13 commits into

nf-core:devfrom

vinisalazar:fix/v1.0.0-cleanup

Jul 30, 2026

Commits on Jul 28, 2026

Ignore branch.yml in files_unchanged lint
vinisalazar
committed
36b2e41
Document local subworkflows in meta.yml (#58)
vinisalazar
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10f037d
Drop template TODO comments (#58)
vinisalazar
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42b0e3a
Format nf files with nextflow lint -format (#52)
vinisalazar
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cd5a90e
Tidy test_full config (#58)
vinisalazar
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d86c3a7
Rebuild schema to drop false defaults (#58)
vinisalazar
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25709f9
Fix singularity CI: bump apptainer, allow user namespaces
vinisalazar
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6caf2a3
Collect software versions from the versions topic (#52)
vinisalazar
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bea9f77

Commits on Jul 29, 2026

Point test configs at nf-core test-datasets
vinisalazar
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b8a8fa7
List humann4 modules in profile meta.yml
vinisalazar
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83a8416
Update fmhfunprofiler snapshot for new sketch database
vinisalazar
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4b219cf
Update outdated nf-core modules and subworkflow
vinisalazar
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b3b906c
Revert metaphlan module update, it breaks conda
vinisalazar
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d6a6c77