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joverlee521 merged 2 commits into from
Sep 26, 2025
Merged

Register workflows in nextstrain-pathogen.yaml #101

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Register workflows in nextstrain-pathogen.yaml
joverlee521 Jul 18, 2025
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Update changelog
joverlee521 Sep 26, 2025
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4 changes: 4 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -6,6 +6,9 @@ the outputs of the workflows.

## 2025

* 26 September 2025: Updated workflow compatibility declaration in `nextstrain-pathogen.yaml`.
**This requires Nextstrain CLI >=10.3.0** to setup and update the pathogen without error messages.
However, workflows will still run with Nextstrain CLI <10.3.0 [#101][]
* 25 July 2025: phylogenetic - Major update to the definition of inputs. ([#80][])

The configuration has been updated from top level keys:
Expand Down Expand Up @@ -43,6 +46,7 @@ inputs:
[#80]: https://github.com/nextstrain/zika/pull/80
[#84]: https://github.com/nextstrain/zika/pull/84
[#85]: https://github.com/nextstrain/zika/pull/85
[#101]: https://github.com/nextstrain/zika/pull/101

## 2024

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9 changes: 7 additions & 2 deletions nextstrain-pathogen.yaml
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Expand Up @@ -6,5 +6,10 @@
# This file's *contents* is the "registration metadata" for the pathogen repo,
# used by `nextstrain setup` and `nextstrain run`.
---
compatibility:
nextstrain run: true
workflows:
ingest:
compatibility:
nextstrain run: True
phylogenetic:
compatibility:
nextstrain run: True