Issues

• Nothing bounds disk use, workflow size, or output size

  ieeta-pt/biochef-agent#91 · Filter by author jorgeMFS opened on Oct 7, 2026

• Any authenticated caller can read any run

  ieeta-pt/biochef-agent#90 · Filter by author jorgeMFS opened on Oct 7, 2026

• A hub that retries a submission runs the work twice

  ieeta-pt/biochef-agent#87 · Filter by author jorgeMFS opened on Oct 4, 2026
  

• /convert answers 500 to a workflow that is merely malformed

  ieeta-pt/biochef-agent#86 · Filter by author jorgeMFS opened on Oct 4, 2026
  1

  

• A hub cannot correlate what it sent with what this agent did

  ieeta-pt/biochef-agent#84 · Filter by author jorgeMFS opened on Oct 4, 2026
  

• The hub cannot tell whether an agent is alive or how busy it is

  ieeta-pt/biochef-agent#82 · Filter by author jorgeMFS opened on Oct 3, 2026 · Milestone 3. HDTR 2027 to 2028
  

• The editor cannot call the agent from a browser: no CORS headers

  ieeta-pt/biochef-agent#74 · Filter by author jorgeMFS opened on Aug 27, 2026

• The tool cache is eventually consistent between processes, not atomic

  ieeta-pt/biochef-agent#65 · Filter by author jorgeMFS opened on Aug 23, 2026

• Container hardening beyond --contain: network, /proc, environment, TMPDIR

  ieeta-pt/biochef-agent#61 · Filter by author jorgeMFS opened on Aug 22, 2026
  1

• The container runner is unverified against a real catalogue binary

  ieeta-pt/biochef-agent#60 · Filter by author jorgeMFS opened on Aug 21, 2026

• An unflagged parameter value is emitted before every flagged argument

  bugworkstream-a
  ieeta-pt/biochef-agent#49 · Filter by author jorgeMFS opened on Aug 17, 2026
  1

• Parameter order follows the request payload, not the recipe declaration

  bugworkstream-a
  ieeta-pt/biochef-agent#44 · Filter by author jorgeMFS opened on Aug 15, 2026

• Registry-supplied strings reach the shell unquoted, and the client chooses the registry

  bugworkstream-c
  ieeta-pt/biochef-agent#42 · Filter by author jorgeMFS opened on Aug 14, 2026

• Numeric parameter values crash the converter: expected str instance, int/float found

  ieeta-pt/biochef-agent#37 · Filter by author jorgeMFS opened on Aug 13, 2026
  1

• Parameter values are interpolated unquoted into the shell block

  bugworkstream-a
  ieeta-pt/biochef-agent#35 · Filter by author jorgeMFS opened on Aug 13, 2026 · Milestone 1. Foundations

• Flagless file outputs are passed positionally, where the frontend omits them

  workstream-a
  ieeta-pt/biochef-agent#34 · Filter by author jorgeMFS opened on Aug 12, 2026 · Milestone 1. Foundations

• The agent depends on the client to supply required parameters, and silently omits them otherwise

  bugworkstream-a
  ieeta-pt/biochef-agent#33 · Filter by author jorgeMFS opened on Aug 12, 2026 · Milestone 1. Foundations

• One source feeding two inputs of the same tool silently drops one

  bugworkstream-a
  ieeta-pt/biochef-agent#32 · Filter by author jorgeMFS opened on Aug 12, 2026 · Milestone 1. Foundations

• Positional argument order follows edge order, not the recipe's declared input order

  bugworkstream-a
  ieeta-pt/biochef-agent#31 · Filter by author jorgeMFS opened on Aug 12, 2026 · Milestone 1. Foundations

• G4. DP budget accounting

  workstream-g
  ieeta-pt/biochef-agent#30 · Filter by author jorgeMFS opened on Aug 12, 2026 · Milestone 4. Federated learning

• G3. Trainers as bundles

  workstream-g
  ieeta-pt/biochef-agent#29 · Filter by author jorgeMFS opened on Aug 12, 2026 · Milestone 4. Federated learning

• G2. Silo to Aggregator protocol

  workstream-g
  ieeta-pt/biochef-agent#28 · Filter by author jorgeMFS opened on Aug 12, 2026 · Milestone 4. Federated learning

• G1. Silo mode

  workstream-g
  ieeta-pt/biochef-agent#27 · Filter by author jorgeMFS opened on Aug 12, 2026 · Milestone 4. Federated learning

• F7. Structured audit log

  workstream-f
  ieeta-pt/biochef-agent#26 · Filter by author jorgeMFS opened on Aug 12, 2026 · Milestone 3. HDTR 2027 to 2028

• F6. TES client

  workstream-f
  ieeta-pt/biochef-agent#25 · Filter by author jorgeMFS opened on Aug 12, 2026 · Milestone 3. HDTR 2027 to 2028