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Update all repos 2026-08-08 #1661

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4 changes: 4 additions & 0 deletions usegalaxy.org/annotation.yml.lock
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Expand Up @@ -21,6 +21,7 @@ tools:
- 4efdca267d51
- b734db305578
- c2ef298da409
- d8b0de0554a9
tool_panel_section_id: annotation
tool_panel_section_label: Annotation
- name: augustus
Expand Down Expand Up @@ -151,6 +152,7 @@ tools:
revisions:
- 637ec5d5368c
- 96e6283e4745
- b7e91ff1a894
tool_panel_section_id: annotation
tool_panel_section_label: Annotation
- name: jcvi_gff_stats
Expand Down Expand Up @@ -218,6 +220,7 @@ tools:
- 1f5641a52664
- 31812e7a1315
- ded48b36f3b7
- ef1966bcece3
tool_panel_section_id: annotation
tool_panel_section_label: Annotation
- name: ncbi_egapx
Expand Down Expand Up @@ -737,6 +740,7 @@ tools:
- name: hmmer_hmmemit
owner: iuc
revisions:
- 82d6ca8212dc
- be03abdc6451
tool_panel_section_id: annotation
tool_panel_section_label: Annotation
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1 change: 1 addition & 0 deletions usegalaxy.org/assembly.yml.lock
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Expand Up @@ -280,6 +280,7 @@ tools:
owner: bgruening
revisions:
- 045c7c3d8e59
- 09cf7b520734
- 0ee0c3089254
- 170061c052ad
- 284a1cb82b61
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1 change: 1 addition & 0 deletions usegalaxy.org/emboss.yml.lock
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Expand Up @@ -7,6 +7,7 @@ tools:
owner: devteam
revisions:
- 63dd26468588
- b60d6f1d72a9
- ce385837c160
- dba489bfcd62
- dc492eb6a4fc
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1 change: 1 addition & 0 deletions usegalaxy.org/evolution.yml.lock
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Expand Up @@ -24,6 +24,7 @@ tools:
- 0878b7fd5260
- 111bd54f6bc4
- 18a61a9c1601
- 241108ef3506
- 24d024316465
- 524d31add34a
- 563c3aa769f2
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1 change: 1 addition & 0 deletions usegalaxy.org/fastq_quality_control.yml.lock
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Expand Up @@ -24,6 +24,7 @@ tools:
- name: trimmomatic
owner: pjbriggs
revisions:
- 75a3b8da8e76
- 898b67846b47
- b9aaed85cbd1
- d94aff5ee623
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12 changes: 12 additions & 0 deletions usegalaxy.org/gemini.yml.lock
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Expand Up @@ -6,6 +6,7 @@ tools:
- name: gemini_annotate
owner: iuc
revisions:
- 081adc1e0cd5
- cf0f0f05ba9f
- f2f3bc622a16
tool_panel_section_id: gemini
Expand All @@ -15,68 +16,79 @@ tools:
revisions:
- 18d13111692b
- 2c68e29c3527
- 8f410ca7eb89
tool_panel_section_id: gemini
tool_panel_section_label: Gemini
- name: gemini_load
owner: iuc
revisions:
- 2270a8b83c12
- 45296e47d565
- cca3391dc8b4
tool_panel_section_id: gemini
tool_panel_section_label: Gemini
- name: gemini_query
owner: iuc
revisions:
- 11fdbee540e5
- 77a1e60fd1de
- da74170c55c7
tool_panel_section_id: gemini
tool_panel_section_label: Gemini
- name: gemini_actionable_mutations
owner: iuc
revisions:
- c2bd9670af64
- db47f4939381
tool_panel_section_id: gemini
tool_panel_section_label: Gemini
- name: gemini_interactions
owner: iuc
revisions:
- 48021eee7e33
- f745f54638e5
tool_panel_section_id: gemini
tool_panel_section_label: Gemini
- name: gemini_burden
owner: iuc
revisions:
- 2adedc87b4b8
- f0bf88e9e689
tool_panel_section_id: gemini
tool_panel_section_label: Gemini
- name: gemini_db_info
owner: iuc
revisions:
- b1e50c7b840e
- c2a413e47fe9
tool_panel_section_id: gemini
tool_panel_section_label: Gemini
- name: gemini_stats
owner: iuc
revisions:
- 56d27b51656b
- b92cfa44f5be
tool_panel_section_id: gemini
tool_panel_section_label: Gemini
- name: gemini_lof_sieve
owner: iuc
revisions:
- 4b5123d51e8c
- 84ede9f5fddb
tool_panel_section_id: gemini
tool_panel_section_label: Gemini
- name: gemini_amend
owner: iuc
revisions:
- 334e946cacd4
- fb2890358aa3
tool_panel_section_id: gemini
tool_panel_section_label: Gemini
- name: gemini_set_somatic
owner: iuc
revisions:
- 7814e39409d1
- 96222aa3e86e
tool_panel_section_id: gemini
tool_panel_section_label: Gemini
- name: gemini_de_novo
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3 changes: 3 additions & 0 deletions usegalaxy.org/graph_display_data.yml.lock
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Expand Up @@ -44,6 +44,7 @@ tools:
- name: jbrowse
owner: iuc
revisions:
- 1483285bdb7a
- 17359b808b01
- 1cfc579079a6
- 2bb2e07a7a21
Expand Down Expand Up @@ -128,6 +129,7 @@ tools:
- name: taxonomy_krona_chart
owner: crs4
revisions:
- 7d01da0b9e18
- e9005d1f3cfd
tool_panel_section_id: graph_display_data
tool_panel_section_label: Graph/Display Data
Expand Down Expand Up @@ -280,6 +282,7 @@ tools:
- bd99e8fbde97
- dbac244d2214
- f1691de443a7
- fb6d30ca4ea6
tool_panel_section_id: graph_display_data
tool_panel_section_label: Graph/Display Data
- name: pe_histogram
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3 changes: 3 additions & 0 deletions usegalaxy.org/machine_learning.yml.lock
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Expand Up @@ -37,6 +37,7 @@ tools:
- 7d84cdd45c15
- 8729f69e9207
- 94cd9ac4a9b1
- a2e4242653ec
- bbf30253c99f
- c460abae83eb
- c5150cceab47
Expand All @@ -50,6 +51,7 @@ tools:
owner: goeckslab
revisions:
- 01e7c5481f13
- 06ef6f6ebfb1
- 07acf85d1c6b
- 0afd970bd8ae
- 11fdac5affb3
Expand Down Expand Up @@ -94,6 +96,7 @@ tools:
- 4a7df9abe4c4
- 4eca9d109de1
- 4fee4504646e
- 7363de120cc2
- 7422e87df409
- 7d16a7bd5f41
- 7d78a6afc958
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2 changes: 2 additions & 0 deletions usegalaxy.org/mapping.yml.lock
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Expand Up @@ -134,6 +134,7 @@ tools:
- 45795f582ae9
- 5ef7ec16b04f
- 79b885ce78d7
- 7f694df20f73
- a00cceb45700
- a2f232ff85ed
- a6fba3d92531
Expand Down Expand Up @@ -233,6 +234,7 @@ tools:
owner: iuc
revisions:
- 35ea4a8b1ea6
- f9ea02afa87d
tool_panel_section_id: mapping
tool_panel_section_label: Mapping
- name: ucsc_axtchain
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9 changes: 9 additions & 0 deletions usegalaxy.org/metagenomic_analysis.yml.lock
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Expand Up @@ -28,6 +28,7 @@ tools:
- 60f307965815
- 62c9df8382c2
- 64be1ac21109
- 7483f7d26984
- 8b8a3f793f0f
- 9553180705b7
- a02aa0dfb850
Expand Down Expand Up @@ -74,6 +75,7 @@ tools:
- name: kraken
owner: devteam
revisions:
- 407507e321b3
- 766d5f63b0f4
- 8ba2174315aa
- aec58624706f
Expand All @@ -82,6 +84,7 @@ tools:
- name: taxonomy_krona_chart
owner: crs4
revisions:
- 7d01da0b9e18
- e9005d1f3cfd
tool_panel_section_id: metagenomic_analysis
tool_panel_section_label: Metagenomic Analysis
Expand Down Expand Up @@ -547,6 +550,7 @@ tools:
revisions:
- 95bf7479d53c
- a00df747f03c
- a6fd47ecbff8
- c2803012bbb3
- fc6c328c292f
tool_panel_section_id: metagenomic_analysis
Expand Down Expand Up @@ -674,6 +678,7 @@ tools:
- name: recentrifuge
owner: iuc
revisions:
- 2db2dc0eca8c
- 591175c0f051
- 612df2a5054f
- 613ee22af97c
Expand Down Expand Up @@ -992,12 +997,14 @@ tools:
revisions:
- 73b667038f46
- 8c957deb8a68
- c91014de79d2
tool_panel_section_id: metagenomic_analysis
tool_panel_section_label: Metagenomic Analysis
- name: coverm_contig
owner: iuc
revisions:
- 28d740f2c0b0
- 66919d81c4d1
- d9b724b4a136
tool_panel_section_id: metagenomic_analysis
tool_panel_section_label: Metagenomic Analysis
Expand Down Expand Up @@ -1126,6 +1133,7 @@ tools:
- name: kegg_pathways_completeness
owner: iuc
revisions:
- 76ad4572eea4
- 78990897aa94
- 9933e2f91584
tool_panel_section_id: metagenomic_analysis
Expand Down Expand Up @@ -1164,6 +1172,7 @@ tools:
owner: iuc
revisions:
- 303e095c89c6
- 66378faa1313
tool_panel_section_id: metagenomic_analysis
tool_panel_section_label: Metagenomic Analysis
- name: comebin
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1 change: 1 addition & 0 deletions usegalaxy.org/multiomics.yml.lock
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Expand Up @@ -6,6 +6,7 @@ tools:
- name: episcanpy_cluster_embed
owner: iuc
revisions:
- 4e214c0acd59
- f4713992f23a
tool_panel_section_id: multiomics
tool_panel_section_label: Multiomics
1 change: 1 addition & 0 deletions usegalaxy.org/multiple_alignments.yml.lock
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Expand Up @@ -121,6 +121,7 @@ tools:
owner: iuc
revisions:
- 27fff8d3793e
- 298dceed950c
- 2d2fe522553d
- 5b0b49b5421c
- 636b049e6141
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4 changes: 4 additions & 0 deletions usegalaxy.org/rna_seq.yml.lock
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Expand Up @@ -37,6 +37,7 @@ tools:
- 26371a1df031
- 6c19daec423d
- b12d81af0291
- eaa10652acc2
- f4af63aaf57a
- fbf98f24097b
tool_panel_section_id: rna_seq
Expand Down Expand Up @@ -104,12 +105,14 @@ tools:
- 4f9c4e6566e5
- 60f888039fb2
- c971db6f0fe5
- f71c54748ff2
tool_panel_section_id: rna_seq
tool_panel_section_label: RNA-seq
- name: kallisto_pseudo
owner: iuc
revisions:
- 01247aaf0a10
- 3741c4204eb5
- 5ae5c312d718
- 87c11c05d238
- ce5d418183c5
Expand Down Expand Up @@ -164,6 +167,7 @@ tools:
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- c772497b2c32
- d5659efd66aa
- d8d32326fbfb
- de21b616f03a
tool_panel_section_id: rna_seq
tool_panel_section_label: RNA-seq
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4 changes: 4 additions & 0 deletions usegalaxy.org/single_cell.yml.lock
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Expand Up @@ -219,6 +219,7 @@ tools:
- name: dropletutils
owner: iuc
revisions:
- 10d928447114
- 2c1200fba922
- a9caad671439
- cdf4443d5625
Expand Down Expand Up @@ -583,6 +584,7 @@ tools:
owner: iuc
revisions:
- 29f5f25b9935
- 4f1baeda3aca
tool_panel_section_id: single_cell
tool_panel_section_label: Single-cell
- name: sinto_barcode
Expand Down Expand Up @@ -747,6 +749,7 @@ tools:
owner: iuc
revisions:
- 6154937135c7
- 83f3879b10e8
- c520f64ffd57
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tool_panel_section_id: single_cell
Expand All @@ -764,6 +767,7 @@ tools:
revisions:
- 46ed93e8da30
- 54ee3884e7ca
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- c15978515ff0
tool_panel_section_id: single_cell
tool_panel_section_label: Single-cell
2 changes: 2 additions & 0 deletions usegalaxy.org/text_manipulation.yml.lock
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Expand Up @@ -129,6 +129,7 @@ tools:
- 56a8da1f2243
- 60ff16842fcd
- 93a3ce78ce55
- c656214aa052
- cd36d6e45e29
- dddadbbac949
tool_panel_section_id: text_manipulation
Expand Down Expand Up @@ -183,6 +184,7 @@ tools:
- name: filter_tabular
owner: iuc
revisions:
- 26fc6cf774d4
- 34d29339abab
- 4d5aae46f850
- 557ec8d7087d
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1 change: 1 addition & 0 deletions usegalaxy.org/transposon_insertion_sequencing.yml.lock
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Expand Up @@ -10,6 +10,7 @@ tools:
- 58234d95978d
- 625d5ea9f3c7
- 8e4a4f240961
- be540ea30602
- d1855ded740a
tool_panel_section_id: transposon_insertion_sequencing
tool_panel_section_label: Transposon Insertion Sequencing
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