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23 changes: 11 additions & 12 deletions tools/angsd/.shed.yml
Original file line number Diff line number Diff line change
@@ -1,13 +1,12 @@
name: angsd
owner: iuc
description: ANGSD and nuclear contamination estimation tools for ancient DNA analysis.
homepage_url: https://github.com/angsd/angsd
long_description: |
This repository contains ANGSD for generating internal counts and an X-chromosome
contamination estimation tool, ported from the nf-core/eager pipeline.
It is designed for paleogenomics research to assess sample quality.
remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/angsd
type: unrestricted
categories:
- Sequence Analysis
name: angsd
owner: iuc
description: ANGSD tools for calculating various genomic statistics, contamination, and error estimation from BAM files.
homepage_url: https://github.com/angsd/angsd
long_description: |
This repository contains ANGSD tools for generating summary statistics from BAM files.
It includes modules for X-chromosome nuclear contamination estimation, sequencing error estimation, allele counting, depth distributions, and mismatch matrix calculations.
remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/angsd
type: unrestricted
categories:
- Sequence Analysis
- Statistics
335 changes: 310 additions & 25 deletions tools/angsd/angsd.xml

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79 changes: 0 additions & 79 deletions tools/angsd/angsd_contamination.xml

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