3dbeacons api

tools/3dbeacons_api/.shed.yml

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+categories:
+  - Proteomics
+description: Wrapper for the 3D-Beacons API
+homepage_url: https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/
+name: 3dbeacons_api
+type: unrestricted
+owner: iuc
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/3dbeacons_api
+long_description: |
+  The 3D-Beacons Network provides unified programmatic access to experimentally determined and predicted structure models
+
+

tools/3dbeacons_api/LICENSE

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+MIT License
+
+Copyright (c) 2026 SIB, University of Basel
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

tools/3dbeacons_api/README.rst

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+============================================
+3D-Beacons API Galaxy integration
+============================================
+
+This is a wrapper for the
+`3D-Beacons API <https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/api/>`_.
+
+`3D-Beacons Network <https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/>`_ provides
+unified programmatic access to experimentally determined and predicted structure
+models.
+
+With the API wrapper, you are able to retrieve protein models or experimental
+structures via UniProt ACs and IDs.
+
+Attribution
+-----------
+
+When you publish or report results using 3D-Beacons, please cite the relevant
+publications found on https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/ (and on the
+Galaxy tool page, once installed). Don't forget to cite the providers of the
+models, too.
+
+License
+-------
+
+License of this Galaxy tool wrapper can be found in `LICENSE <LICENSE>`_.