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Issue with Nextflow 26.04.6's new parser (Parser v2)

Status: Open.

#45 In epi2me-labs/wf-alignment;

· xavier-j opened on Jul 17, 2026

samtools sort aux_parse error: "Incomplete aux field, samtools sort: truncated file. Aborting"

Status: Open.

#44 In epi2me-labs/wf-alignment;

· ajeffs opened on Jul 8, 2025

What is the counts file used for?

questionFurther information is requestedFurther information is requested

Status: Open.

#42 In epi2me-labs/wf-alignment;

· amhaaning opened on May 28, 2025