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@cov-lineages

CoV-lineages

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  1. pango-designation pango-designation Public

    Repository for suggesting new lineages that should be added to the current scheme

    Jupyter Notebook 1.1k 103

  2. pangolin pangolin Public

    Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    Python 455 107

  3. pangoLEARN pangoLEARN Public

    Store of the trained model for pangolin to access.

    PureBasic 55 13

  4. constellations constellations Public

    Python 45 17

  5. scorpio scorpio Public

    serious constellations of reoccurring phylogenetically-independent origin

    Python 39 4

  6. lineages lineages Public archive

    Resources for calling and describing the circulating lineages of SARS-CoV-2

    Python 38 10

Repositories

Showing 10 of 18 repositories
  • pango-designation Public

    Repository for suggesting new lineages that should be added to the current scheme

    cov-lineages/pango-designation's past year of commit activity
    Jupyter Notebook 1,077 103 47 3 Updated Sep 7, 2026
  • pangolin Public

    Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    cov-lineages/pangolin's past year of commit activity
    Python 455 GPL-3.0 107 17 3 Updated Aug 17, 2026
  • pangolin-assignment Public

    The latest lineage assignments from pangolin.

    cov-lineages/pangolin-assignment's past year of commit activity
    Python 8 GPL-3.0 2 2 0 Updated Aug 17, 2026
  • pangolin-data Public

    Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments

    cov-lineages/pangolin-data's past year of commit activity
    PureBasic 34 GPL-3.0 2 6 0 Updated Aug 17, 2026
  • cov-lineages/constellations's past year of commit activity
    Python 45 17 3 1 Updated Feb 13, 2026
  • scorpio Public

    serious constellations of reoccurring phylogenetically-independent origin

    cov-lineages/scorpio's past year of commit activity
    Python 39 GPL-3.0 4 6 0 Updated Feb 13, 2026
  • hedgehog Public

    Spikey SARS-CoV-2 sequence based lineage set assignment

    cov-lineages/hedgehog's past year of commit activity
    Python 5 GPL-3.0 3 1 1 Updated Jan 12, 2026
  • cov-lineages/lineages-website's past year of commit activity
    HTML 16 14 3 1 Updated Oct 29, 2025
  • grinch Public

    global report investigating novel coronavirus haplotypes

    cov-lineages/grinch's past year of commit activity
    Python 6 GPL-3.0 2 3 2 Updated Sep 2, 2024
  • Sample_names Public
    cov-lineages/Sample_names's past year of commit activity
    0 0 0 0 Updated Oct 15, 2022

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