Issues

• REACH web service is down

  clulab/reach#807 · Filter by author kingfish777 opened on Jun 9, 2025
  1

• java.lang.RuntimeException: DyNet could not be loaded!

  clulab/reach#806 · Filter by author GourReetika opened on Dec 3, 2024
  4

  

• trying to integrate bionlp processors from reach in odinson

  clulab/reach#802 · Filter by author Crispae opened on Oct 15, 2023
  5

• Compiler warnings

  clulab/reach#797 · Filter by author kwalcock opened on Jun 28, 2023
  1

  

• Mentions with duplicate IDs are removed upon deserialization

  clulab/reach#794 · Filter by author kwalcock opened on Mar 30, 2023
  2

• Reach crashes on input of large nxml files with a stack overflow

  clulab/reach#792 · Filter by author kwalcock opened on Mar 16, 2023

• Long antecedent chains will blow the stack

  clulab/reach#791 · Filter by author kwalcock opened on Mar 16, 2023
  4

• Large files break serial-json output

  clulab/reach#790 · Filter by author kwalcock opened on Mar 11, 2023

• Mentions should be sorted before output

  clulab/reach#787 · Filter by author kwalcock opened on Mar 4, 2023

• Triggers aren't converted to Bio- or Coref-Mentions and don't survive serialization

  clulab/reach#785 · Filter by author kwalcock opened on Mar 2, 2023
  2

• Failing test is not actually tested

  clulab/reach#784 · Filter by author kwalcock opened on Mar 1, 2023
  1

  

• RunReachCLI gets stuck with specific nxml files

  clulab/reach#783 · Filter by author guerrerosimonl opened on Feb 22, 2023
  6

• Let BioNLPTokenizerPostProcessor mutant detection match Reach rules #49

  clulab/reach#782 · Filter by author kwalcock opened on Feb 17, 2023

• BioNLPProcessor.annotate fails when withRuleNER is set to false

  clulab/reach#781 · Filter by author kwalcock opened on Feb 17, 2023
  1

• Why is testing done with a script?

  clulab/reach#779 · Filter by author kwalcock opened on Jan 5, 2023
  2

• Wrong field in PubmedAbstractIndexer

  clulab/reach#771 · Filter by author kwalcock opened on Jun 30, 2022
  1

  

• Difficulty installing reach through sbt

  clulab/reach#758 · Filter by author djinnome opened on Jul 9, 2021
  16

• bioresources should be standard text files, version controlled, directly readable, etc.

  clulab/reach#743 · Filter by author kwalcock opened on Mar 31, 2021
  5

• Possible infinite loop in serial-json output

  clulab/reach#736 · Filter by author kwalcock opened on Jan 27, 2021
  4

  

• Allow BioProcess as controller?

  clulab/reach#682 · Filter by author bgyori opened on Apr 27, 2020
  1

• Case-sensitive handling of stopwords and overrides

  clulab/reach#680 · Filter by author bgyori opened on Apr 24, 2020
  6

• Misleading extraction of siRNA descriptions as self-activations or inhibitions

  clulab/reach#646 · Filter by author johnbachman opened on Dec 18, 2019
  1

• Problems interpreting results

  clulab/reach#640 · Filter by author SSicaaJL opened on Oct 11, 2019
  1

• NxmlReader error | No roots in graph

  clulab/reach#634 · Filter by author RohitChattopadhyay opened on Jul 14, 2019
  5

• Subject/object roles reversed.

  clulab/reach#617 · Filter by author johnbachman opened on Dec 11, 2018
  1