fix .bridge file loading by encoding brackets using toURI().toString()

[traybug23]

BridgeDb loading issues #211

The issue was that when a .bridge file was being downloaded twice, Windows would automatically add (1) to the file name and the plugin was unable to load it.

Solution: .toURI().toString(); encodes the parantheses from special character to %28 and %29. This would also encode (space) in the file name as %20, thus in case a file would have space in its name, it will still be loaded.

( is encoded as %28
) is encoded as %29
(space) is encoded as %20

Now, the BridgeDb files can load successfully.
@egonw @DeniseSl22

[traybug23]

@egonw I added the missing + in the return string.

[egonw]

Now, the BridgeDb files can load successfully. @egonw @DeniseSl22

@traybug23, I am sorry that it took so long. But I cannot put this in the first next release yet, as I do not have enough time right now to create a new PathVisio version.

How did you test this? Did you recompile PathVisio with the new jars?

When I use the below test code, I see that the two approaches are not equivalent, and I am afraid that the addition of file: will mess up the SQL connection link:

file = new File("pom (1).xml")
println file

println file.getAbsolutePath()
println file.toURI().toString()

[egonw]

See other reply just a few seconds ago.