Issues

• Network Graphs

  bimberlabinternal/tcrClustR#57 · Filter by author GWMcElfresh opened on Mar 5, 2026

• enrichment post-hoc function

  bimberlabinternal/tcrClustR#51 · Filter by author GWMcElfresh opened on Dec 18, 2025
  3

• make a dummy object helper function

  bimberlabinternal/tcrClustR#50 · Filter by author GWMcElfresh opened on Dec 18, 2025

• Review incompatible cell-to-cell distances

  bimberlabinternal/tcrClustR#40 · Filter by author GWMcElfresh opened on Dec 9, 2025

• Spruce up the python setup

  bimberlabinternal/tcrClustR#34 · Filter by author GWMcElfresh opened on Dec 8, 2025

• force row and column names in rpy2's rds files

  bimberlabinternal/tcrClustR#33 · Filter by author GWMcElfresh opened on Dec 8, 2025
  1

• Prune code

  bimberlabinternal/tcrClustR#32 · Filter by author GWMcElfresh opened on Dec 8, 2025
  1

• Joining "master tables" workflow

  bimberlabinternal/tcrClustR#31 · Filter by author GWMcElfresh opened on Dec 8, 2025

• Increasing enforcement of matching segments

  bimberlabinternal/tcrClustR#30 · Filter by author GWMcElfresh opened on Dec 8, 2025

• Review/Cleanup README and vignettes

  bimberlabinternal/tcrClustR#29 · Filter by author bbimber opened on Dec 7, 2025

• Should discuss/review visualizations to include in package

  bimberlabinternal/tcrClustR#28 · Filter by author bbimber opened on Dec 7, 2025

• Should discuss and review use-cases related to a seurat object and standalone TCR data

  bimberlabinternal/tcrClustR#27 · Filter by author bbimber opened on Dec 7, 2025

• Should discuss and streamline steps related to python setup and executables

  bimberlabinternal/tcrClustR#26 · Filter by author bbimber opened on Dec 7, 2025

• Should this call setseed()?

  bimberlabinternal/tcrClustR#24 · Filter by author bbimber opened on Dec 7, 2025

• Review the organism and DB file selection

  bimberlabinternal/tcrClustR#22 · Filter by author bbimber opened on Dec 2, 2025
  1

• SeqLogos and V&J gene summaries per cluster

  bimberlabinternal/tcrClustR#16 · Filter by author GWMcElfresh opened on Aug 14, 2025

• Large clone populations

  bimberlabinternal/tcrClustR#10 · Filter by author GWMcElfresh opened on Jun 23, 2025