feat: Add support for labelmap seg images in any supported tsuid (also for compressed bitmap)

.circleci/config.yml

@@ -1,43 +1,47 @@
 version: 2.1
 
+# ci: re-trigger pipeline
+
 orbs:
   codecov: codecov/codecov@1.0.5
   cypress: cypress-io/cypress@3.4.2
 
 defaults: &defaults
   docker:
-    - image: cimg/node:20.19.0
+    - image: cimg/node:24.0.0
       environment:
         TERM: xterm
         QUICK_BUILD: true
   working_directory: ~/repo
 
 commands:
-  install_bun:
+  install_pnpm:
     steps:
       - run:
-          name: Install Bun
+          name: Install pnpm
           command: |
-            curl -fsSL https://bun.sh/install | bash -s "bun-v1.2.23"
-            echo 'export BUN_INSTALL="$HOME/.bun"' >> $BASH_ENV
-            echo 'export PATH="$BUN_INSTALL/bin:$PATH"' >> $BASH_ENV
+            # The cimg/node global modules dir (/usr/local/lib/node_modules) is
+            # root-owned, so a plain `npm install -g` fails with EACCES. Install
+            # with sudo so the global pnpm binary lands in the shared prefix.
+            sudo npm install -g pnpm@11.5.2
+            echo 'export PATH="$(pnpm store path)/../.bin:$PATH"' >> $BASH_ENV
             source $BASH_ENV
 
 jobs:
   UNIT_TESTS:
     <<: *defaults
     resource_class: large
     steps:
-      - install_bun
+      - install_pnpm
       - run: node --version
       - checkout
       - run:
           name: Install Dependencies
-          command: bun install --no-save
+          command: pnpm install --no-frozen-lockfile
       # RUN TESTS
       - run:
           name: 'JavaScript Test Suite'
-          command: bun run test:unit:ci
+          command: pnpm run test:unit:ci
       # platform/app
       - run:
           name: 'VIEWER: Combine report output'
@@ -71,17 +75,17 @@ jobs:
     steps:
       # Checkout code and ALL Git Tags
       - checkout
-      - install_bun
+      - install_pnpm
       - run:
           name: Install Dependencies
-          command: bun install --no-save
+          command: pnpm install --no-frozen-lockfile
       # Build & Test
       - run:
           name: 'Perform the versioning before build'
-          command: bun ./version.mjs
+          command: node ./version.mjs
       - run:
           name: 'Build the OHIF Viewer'
-          command: bun run build
+          command: pnpm run build
           no_output_timeout: 45m
       - run:
           name: 'Upload SourceMaps, Send Deploy Notification'
@@ -107,14 +111,55 @@ jobs:
     <<: *defaults
     resource_class: large
     steps:
-      - install_bun
+      - install_pnpm
       # Checkout code and ALL Git Tags
       - checkout
       - attach_workspace:
           at: ~/repo
+      # SECURITY AUDIT - only when pnpm-lock.yaml has changed
+      - run:
+          name: 'Security Audit - High Risk Vulnerabilities'
+          command: |
+            git fetch origin master 2>/dev/null || true
+            BASE_REF=$(git merge-base HEAD origin/master 2>/dev/null)
+            if [[ -z "$BASE_REF" ]]; then
+              echo "Could not determine base ref (e.g. shallow clone or no origin/master), skipping security audit."
+              exit 0
+            fi
+            CHANGED_FILES=$(git diff --name-only origin/master...HEAD 2>/dev/null || echo "")
+            if ! echo "$CHANGED_FILES" | grep -qx 'pnpm-lock.yaml'; then
+              echo "pnpm-lock.yaml unchanged - skipping security audit."
+              exit 0
+            fi
+            echo "pnpm-lock.yaml changed - running pnpm audit for security vulnerabilities..."
+            echo "Checking for HIGH-RISK vulnerabilities..."
+
+            if pnpm audit --audit-level high; then
+              echo "No high-risk vulnerabilities found"
+              echo "Security audit passed!"
+            else
+              echo ""
+              echo "HIGH-RISK VULNERABILITIES DETECTED!"
+              echo "======================================"
+              echo ""
+              echo "To fix these issues:"
+              echo "  1. Run: pnpm audit"
+              echo "  2. Review the vulnerability details"
+              echo "  3. Update affected packages to secure versions"
+              echo "  4. Test your changes"
+              echo "  5. Re-run: pnpm audit --audit-level high"
+              echo ""
+              echo "Full audit report:"
+
+              pnpm audit || true
+
+              echo ""
+              echo "This build cannot proceed until high-risk vulnerabilities are resolved."
+              exit 1
+            fi
       - run:
           name: Install Dependencies
-          command: bun install --frozen-lockfile
+          command: pnpm install
       - run:
           name: Avoid hosts unknown for github
           command: |
@@ -129,24 +174,24 @@ jobs:
       - run:
           name: build half of the packages (to avoid out of memory in circleci)
           command: |
-            bun run build:package-all
+            pnpm run build:package-all
       - run:
           name: build the other half of the packages
           command: |
-            bun run build:package-all-1
+            pnpm run build:package-all-1
 
   NPM_PUBLISH:
     <<: *defaults
     resource_class: large
     steps:
-      - install_bun
+      - install_pnpm
       # Checkout code and ALL Git Tags
       - checkout
       - attach_workspace:
           at: ~/repo
       - run:
           name: Install Dependencies
-          command: bun install --no-save
+          command: pnpm install --no-frozen-lockfile
       - run:
           name: Avoid hosts unknown for github
           command: |
@@ -161,11 +206,11 @@ jobs:
       - run:
           name: build half of the packages (to avoid out of memory in circleci)
           command: |
-            bun run build:package-all
+            pnpm run build:package-all
       - run:
           name: build the other half of the packages
           command: |
-            bun run build:package-all-1
+            pnpm run build:package-all-1
       - run:
           name: increase min time out
           command: |
@@ -177,14 +222,14 @@ jobs:
       - run:
           name: publish package versions
           command: |
-            bun ./publish-version.mjs
+            node ./publish-version.mjs
       - run:
           name: Again set the NPM registry (was deleted in the version script)
           command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
       - run:
           name: publish package dist
           command: |
-            bun ./publish-package.mjs
+            node ./publish-package.mjs
       - persist_to_workspace:
           root: ~/repo
           paths:
@@ -330,11 +375,20 @@ jobs:
     resource_class: large
     parallelism: 8
     steps:
-      - install_bun
+      - install_pnpm
       - run:
           name: Install System Dependencies
           command: |
-            sudo apt-get update
+            # CircleCI's base image registers third-party apt sources (git-lfs via
+            # packagecloud, git-core PPA via launchpad) that periodically hang
+            # `apt-get update`. The Cypress libs below all come from the Ubuntu
+            # archive, so drop those sources and bound the update with timeouts +
+            # retries so a slow mirror can't stall the job indefinitely.
+            sudo rm -f /etc/apt/sources.list.d/*git* || true
+            sudo apt-get update \
+              -o Acquire::Retries=3 \
+              -o Acquire::http::Timeout=20 \
+              -o Acquire::https::Timeout=20
             sudo apt-get install -y xvfb libgtk2.0-0 libgtk-3-0 libgbm-dev libnotify-dev libgconf-2-4 libnss3 libxss1 libasound2 libxtst6
       - run:
           name: Start Xvfb
@@ -344,74 +398,15 @@ jobs:
           name: Export Display Variable
           command: export DISPLAY=:99
       - cypress/install:
-          install-command: yarn install --frozen-lockfile --no-save
+          install-command: pnpm install
       - cypress/run-tests:
+          # CI runs headless under Xvfb with no GPU, so Electron uses software
+          # WebGL. Newer Chromium deprecated that implicit fallback (canvas
+          # rendering degrades and races with element clicks). ELECTRON_EXTRA_LAUNCH_ARGS
+          # is the reliable way to pass the opt-in flag to Cypress's Electron browser.
           cypress-command: |
-            npx wait-on@latest http://localhost:3000 && cd platform/app && npx cypress run --record --parallel
-          start-command: yarn run test:data && yarn run test:e2e:serve
-
-  SECURITY_AUDIT:
-    <<: *defaults
-    resource_class: large
-    steps:
-      - install_bun
-      - checkout
-      - run:
-          name: 'Security Audit - High Risk Vulnerabilities'
-          command: |
-            git fetch origin master 2>/dev/null || true
-            BASE_REF=$(git merge-base HEAD origin/master 2>/dev/null)
-            if [[ -z "$BASE_REF" ]]; then
-              echo "Could not determine base ref (e.g. shallow clone or no origin/master), skipping security audit."
-              exit 0
-            fi
-            CHANGED_FILES=$(git diff --name-only origin/master...HEAD 2>/dev/null || echo "")
-            if ! echo "$CHANGED_FILES" | grep -qx 'bun.lock'; then
-              echo "⏭️ bun.lock unchanged - skipping security audit."
-              exit 0
-            fi
-            echo "🔍 bun.lock changed - running bun audit for security vulnerabilities..."
-            echo "Checking for HIGH-RISK vulnerabilities..."
-
-            # Define ignored vulnerabilities with comments
-            IGNORED_VULNS=(
-              "GHSA-3ppc-4f35-3m26"  # CVE-2026-26996 - minimatch via itk-wasm and glob is safe because it does NOT use the CLI
-                                     # CVE-2026-26996 - minimatch via other packages are strictly for building and CI/CD purposes; no user supplied expressions are passed to minimatch
-              "GHSA-7r86-cg39-jmmj"  # CVE-2026-27903 - minimatch same as above
-              "GHSA-23c5-xmqv-rm74"  # CVE-2026-27904 - minimatch same as above
-              "GHSA-c2c7-rcm5-vvqj"  # CVE-2026-33671 - picomatch is generally used for development and CI/CD purposes
-            )
-
-            # Build ignore flags
-            IGNORE_FLAGS=""
-            for vuln in "${IGNORED_VULNS[@]}"; do
-              IGNORE_FLAGS="$IGNORE_FLAGS --ignore=$vuln"
-            done
-
-            if bun audit $IGNORE_FLAGS --audit-level high; then
-              echo "✅ No high-risk vulnerabilities found"
-              echo "🎉 Security audit passed!"
-              exit 0
-            else
-              echo ""
-              echo "❌ HIGH-RISK VULNERABILITIES DETECTED!"
-              echo "======================================"
-              echo ""
-              echo "🔧 To fix these issues:"
-              echo "  1. Run: bun audit"
-              echo "  2. Review the vulnerability details"
-              echo "  3. Update affected packages to secure versions"
-              echo "  4. Test your changes"
-              echo "  5. Re-run: bun audit --audit-level high"
-              echo ""
-              echo "📋 Full audit report:"
-
-              bun audit $IGNORE_FLAGS --audit-level low || true
-
-              echo ""
-              echo "❌ This build cannot proceed until high-risk vulnerabilities are resolved."
-              exit 1
-            fi
+            npx wait-on@latest http://localhost:3000 && cd platform/app && ELECTRON_EXTRA_LAUNCH_ARGS="--enable-unsafe-swiftshader" npx cypress run --record --parallel
+          start-command: pnpm run test:data && pnpm run test:e2e:serve
 
   DOCKER_MULTIARCH_MANIFEST:
     <<: *defaults
@@ -502,10 +497,6 @@ workflows:
       - CYPRESS:
           name: 'Cypress Tests'
           context: cypress
-      - SECURITY_AUDIT:
-          filters:
-            branches:
-              ignore: master
 
   # viewer-dev.ohif.org
   DEPLOY_MASTER:

.github/.dependabot.yaml

@@ -1,18 +1,8 @@
 version: 2
 enable-beta-ecosystems: true
 updates:
-  - package-ecosystem: 'bun'
-    # Disable all pull requests for bun version updates.
-    open-pull-requests-limit: 0
-    directory: '/'
-    schedule:
-      interval: 'daily'
-    labels: ['dependencies']
-    commit-message:
-      prefix: 'chore'
-      include: 'scope'
   - package-ecosystem: 'npm'
-    # Disable all pull requests for npm version updates.
+    # Disable all pull requests for npm/pnpm version updates.
     open-pull-requests-limit: 0
     directory: '/'
     schedule: