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Update spack-packages (#82; cherry-pick upstream Spack package updates); pin py-pandas-datareader #2114

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Merged
climbfuji merged 5 commits into from
Sep 4, 2026
Merged

Update spack-packages (#82; cherry-pick upstream Spack package updates); pin py-pandas-datareader #2114

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f57cf3a
Update .gitmodules and submodule pointer for repos/builtin
climbfuji Sep 2, 2026
311c10e
Pin py-pandas-datareader to 0.10 in configs/common/packages.yaml
climbfuji Sep 3, 2026
7901194
Pin py-pandas-datareader to 0.10 in configs/common/packages.yaml
climbfuji Sep 3, 2026
65e21a2
Merge branch 'feature/matt-cherry-pick-upstream-packages' of https://…
climbfuji Sep 3, 2026
c67daef
Revert .gitmodules and update submodule pointer for repos/builtin
climbfuji Sep 3, 2026
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6 changes: 4 additions & 2 deletions .gitmodules
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Original file line number Diff line number Diff line change
Expand Up @@ -4,5 +4,7 @@
branch = spack-stack-dev
[submodule "repos/builtin"]
path = repos/builtin
url = https://github.com/jcsda/spack-packages
branch = spack-stack-dev
#url = https://github.com/jcsda/spack-packages
#branch = spack-stack-dev
url = https://github.com/GMAO-SI-Team/spack-packages
branch = feature/cherry-pick-upstream-packages
4 changes: 4 additions & 0 deletions configs/common/packages.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -452,6 +452,10 @@ packages:
py-pandas:
require:
- '@:2'
# Restrict py-pandas-datareader to older versions compatible with py-pandas
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py-pandas-datareader:
require:
- '@:0.10'
# To avoid duplicate packages
py-poetry-core:
require:
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2 changes: 1 addition & 1 deletion repos/builtin
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Submodule builtin updated 39 files
+12 −1 repos/spack_repo/builtin/packages/arrow/package.py
+18 −2 repos/spack_repo/builtin/packages/awscli_v2/package.py
+11 −0 repos/spack_repo/builtin/packages/awscli_v2/skip-autocomplete-index.patch
+13 −1 repos/spack_repo/builtin/packages/bufr/package.py
+1 −0 repos/spack_repo/builtin/packages/ecbuild/package.py
+1 −1 repos/spack_repo/builtin/packages/ecflow/package.py
+7 −0 repos/spack_repo/builtin/packages/ectrans/package.py
+25 −0 repos/spack_repo/builtin/packages/fms/cmake-build-tests-option-2026.01.01.patch
+5 −0 repos/spack_repo/builtin/packages/fms/package.py
+7 −1 repos/spack_repo/builtin/packages/harfbuzz/package.py
+3 −0 repos/spack_repo/builtin/packages/hdf/package.py
+18 −0 repos/spack_repo/builtin/packages/hdf5/nag_hl_fortran_mpi_module.patch
+108 −0 repos/spack_repo/builtin/packages/hdf5/nag_linux_threads.patch
+12 −0 repos/spack_repo/builtin/packages/hdf5/package.py
+7 −0 repos/spack_repo/builtin/packages/ncview/package.py
+5 −0 repos/spack_repo/builtin/packages/nvtx/package.py
+7 −0 repos/spack_repo/builtin/packages/openblas/package.py
+3 −0 repos/spack_repo/builtin/packages/parallelio/package.py
+1 −0 repos/spack_repo/builtin/packages/py_awscrt/package.py
+3 −2 repos/spack_repo/builtin/packages/py_cachetools/package.py
+2 −6 repos/spack_repo/builtin/packages/py_dask/package.py
+2 −1 repos/spack_repo/builtin/packages/py_h5py/package.py
+5 −1 repos/spack_repo/builtin/packages/py_llvmlite/package.py
+4 −0 repos/spack_repo/builtin/packages/py_numba/package.py
+19 −3 repos/spack_repo/builtin/packages/py_pandas_datareader/package.py
+13 −0 repos/spack_repo/builtin/packages/py_pandas_datareader/py312-versioneer.patch
+37 −0 repos/spack_repo/builtin/packages/py_pykdtree/package.py
+64 −0 repos/spack_repo/builtin/packages/py_pyresample/package.py
+28 −0 repos/spack_repo/builtin/packages/py_pytest_lazy_fixtures/package.py
+5 −0 repos/spack_repo/builtin/packages/py_scipy/nag_disable_version_script.patch
+6 −2 repos/spack_repo/builtin/packages/py_scipy/package.py
+26 −0 repos/spack_repo/builtin/packages/py_torch/air_gapped_nnpack_cmake.patch
+26 −0 repos/spack_repo/builtin/packages/py_torch/air_gapped_nnpack_cmake_older.patch
+91 −0 repos/spack_repo/builtin/packages/py_torch/envvar-forwarding-188242.patch
+48 −14 repos/spack_repo/builtin/packages/py_torch/package.py
+70 −42 repos/spack_repo/builtin/packages/py_urllib3/package.py
+2 −2 repos/spack_repo/builtin/packages/python/package.py
+8 −1 repos/spack_repo/builtin/packages/rust/package.py
+9 −0 repos/spack_repo/builtin/packages/yafyaml/package.py
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