Cherry-pick upstream Spack package updates - #82

Merged

climbfuji merged 36 commits into

JCSDA:spack-stack-devfrom

GMAO-SI-Team:feature/cherry-pick-upstream-packages

Sep 3, 2026

Commits on Aug 18, 2026

arrow: add mimalloc variant (#5632)
mathomp4
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b65a162
py-awscrt: add 0.35.0, awscli-v2: add 2.35.16 (#5629)
mathomp4
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d4b7aae
hdf: fix build with %gcc@15: (#5662)
mathomp4
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1bbe47f
ncview: add -std=gnu17 when %gcc@15: to fix gcc-15 (#5663)
mathomp4
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eb12575
nvtx: add fix for build with GCC 15 (#5714)
mathomp4
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9954e90
openblas: fix dylib install name for cmake build on macOS (#5504)
mathomp4
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e96e63b
parallelio: skip RPATHs with NAG (#6064)
mathomp4
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75b15c4
py-h5py: add hdf2 support (#5630)
mathomp4
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c4b521c
py-numba: add 0.66.0, py-llvmlite: add 0.48.0 (#5503)
mathomp4
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dd27a71
py-pandas-datareader: add 0.11.0, 0.11.1 (#5642)
mathomp4
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eb7216d
py-scipy: disable GNU version script for NAG compiler (#5906)
mathomp4
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49547bb
py-torch: honor disabled CMake features in 2.12.0:2.13.0 (#5707)
mathomp4
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1c02018
yafyaml: CMake fix for NAG (#5904)
mathomp4
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7746f9b
rust: honor CARGO_HOME for offline dependent builds
mathomp4
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0315a87
Update repos/spack_repo/builtin/packages/rust/package.py

mathomp4
and
alecbcs
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cdef2ee
Update repos/spack_repo/builtin/packages/rust/package.py

mathomp4
and
mcmehrtens
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239b2d6
py-urllib3: add v2.7.0 (#4811)

authored and
mathomp4
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073fe36
python: check for gettext and ncurses in spec before accessing prefix/libs
mathomp4
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16ecf1b
hdf5: add NAG compiler patches for Linux threads and HL Fortran MPI module
mathomp4
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0aa550a
py-scipy: restrict darwin+gcc stdc patches to @:1.8 (meson builds don't have setup.py)
mathomp4
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80861c3
py-torch: add air-gapped NNPACK patch, setuptools 2.9 bound, and intel-oneapi-mkl path fix
mathomp4
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9cc7bdb
py-torch: sync with latest upstream (v2.13.0, air-gapped NNPACK) and fix intel-oneapi-mkl spec lookup
mathomp4
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a6779cf
py-cachetools, py-dask: sync with upstream Spack develop
mathomp4
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a9fc55d
py-pyresample, py-pykdtree, py-pytest-lazy-fixtures: new packages for pyresample support
mathomp4
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afd76e0
Fix for ecflow
mathomp4
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bb52369
Move to use SPACK_CARGO_HOME
mathomp4
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f5d325c

Commits on Aug 20, 2026

Update repos/spack_repo/builtin/packages/py_scipy/package.py

mathomp4
and
climbfuji
authored
685b219
Fix hash for py-pykdtree
mathomp4
committed
94934a3

Commits on Aug 24, 2026

Fix for bufr tmp noexec issue
mathomp4
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84eafda
Real fix for bufr
mathomp4
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38892e3

Commits on Aug 25, 2026

Merge branch 'spack-stack-dev' into feature/cherry-pick-upstream-packages
mathomp4
authored
580ea4a

Commits on Aug 26, 2026

fms: disable unit tests for 2026.01.01
mathomp4
committed
508ce12

Commits on Aug 28, 2026

Updates to fix ectrans issue
mathomp4
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0dfea02

Commits on Sep 1, 2026

Fix for harfbuzz at NAS TOSS5
mathomp4
committed
a36c254

Commits on Sep 3, 2026