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@Huang-lab

Huang Lab

Precision Omics Lab at Icahn School of Mount Sinai (PI: Kuan-lin Huang)

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  1. fastVEP fastVEP Public

    fastVEP: High-performance Variant Effect Predictor in Rust

    Rust 156 34

  2. RastQC RastQC Public

    RastQC - Combining FastQC, MultiQC, longread QC functionality for high-throughput sequencing data, written in Rust

    Rust 58 4

  3. figure-extractor figure-extractor Public

    Flask-based service using PDFFigures 2.0 to extract figures and tables from scholarly PDFs. Features REST API, CLI, Docker support, and JSON metadata output (~1.5s/page processing). Designed for do…

    Python 18 4

  4. AeQTL AeQTL Public

    Python 4 4

  5. CoMutCNV CoMutCNV Public

    Investigation of Co-occurrence of CNA and Mutations

    R 4

  6. SParCS SParCS Public

    HTML 3 3

Repositories

Showing 10 of 64 repositories
  • fastVEP Public

    fastVEP: High-performance Variant Effect Predictor in Rust

    Huang-lab/fastVEP's past year of commit activity
    Rust 156 Apache-2.0 34 1 0 Updated Oct 11, 2026
  • hypothyroid_nonresponder Public

    Identify GWAS/Proteomics biomarkers for hypothyroidism non-responders (do not respond to standard T4 treatment)

    Huang-lab/hypothyroid_nonresponder's past year of commit activity
    Shell 0 MIT 0 2 0 Updated Oct 10, 2026
  • biomarker-tracing Public Forked from Mustardburger/biomarker-tracing

    Scripts for identifying significant cell types from proteomics summary statistics

    Huang-lab/biomarker-tracing's past year of commit activity
    Python 1 MIT 4 0 2 Updated Oct 8, 2026
  • lab-repo-template Public template

    Best-practice backbone for Huang Lab repos: conventions, .gitignore, CI, hygiene and history scans, Python/R/Rust scaffolds

    Huang-lab/lab-repo-template's past year of commit activity
    Python 0 MIT 0 0 2 Updated Oct 7, 2026
  • AiGCT Public
    Huang-lab/AiGCT's past year of commit activity
    Python 1 MIT 0 3 3 Updated Oct 7, 2026
  • WTC_PRAD_VisiumHD_Recurrence Public
    Huang-lab/WTC_PRAD_VisiumHD_Recurrence's past year of commit activity
    Python 0 MIT 0 1 1 Updated Oct 7, 2026
  • VarCrawl Public
    Huang-lab/VarCrawl's past year of commit activity
    TypeScript 1 MIT 2 0 0 Updated Oct 5, 2026
  • VCR Public

    Variant cancer risk: penetrance, base rates and ClinVar for a variant

    Huang-lab/VCR's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 6, 2026
  • AgentMultiverse Public

    Agentic Multiverse Analysis: many blinded, recorded agent runs whose spread is the measurement

    Huang-lab/AgentMultiverse's past year of commit activity
    Python 0 0 0 0 Updated Oct 5, 2026
  • RastQC Public

    RastQC - Combining FastQC, MultiQC, longread QC functionality for high-throughput sequencing data, written in Rust

    Huang-lab/RastQC's past year of commit activity
    Rust 58 MIT 4 0 0 Updated Sep 24, 2026
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