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feat: csv shifting - #149

Merged

g-pechorin merged 73 commits into

mainfrom

book_page

Oct 19, 2026

Merged

feat: csv shifting#149
g-pechorin merged 73 commits into
mainfrom
book_page

Commits on Sep 28, 2026
- renamed the parameter for clarity
  peterlavalle-nhs
  committed
  69c6b65
- always check sheets we're checking (for hidden dates et al)
  peterlavalle-nhs
  committed
  ba6742d
- detects the problem
  peterlavalle-nhs
  committed
  ff2f4a2
- more detail for the error message
  peterlavalle-nhs
  committed
  1789a14
- validates what it should
  peterlavalle-nhs
  committed
  920b301
- fixes ignores to skip temp xlsx files
  peterlavalle-nhs
  committed
  0547569
- passes all tests again
  peterlavalle-nhs
  committed
  34469d5
Commits on Sep 29, 2026
- checks for padded cell values
  peterlavalle-nhs
  committed
  45ab14d
- updates it to handle ignored values with spaces around them
  peterlavalle-nhs
  committed
  5250972
- Update log message and comments for clarity
  g-pechorin
  authored
  d727465
- might do the dates
  peterlavalle-nhs
  committed
  592c130
- Merge remote-tracking branch 'origin/shift_ignore' into shift_ignore
  peterlavalle-nhs
  committed
  32bc10c
- more corrections
  peterlavalle-nhs
  committed
  4b4479a
Commits on Oct 1, 2026
- raises a specific error for missing patient columns
  peterlavalle-nhs
  committed
  19ff976
- (WIP) need to digest/adapt the patient_id loading
  peterlavalle-nhs
  authored
  af53890
- updates the rest of the date shift
  peterlavalle-nhs
  authored
  3fa2186
- improved function and comments
  peterlavalle-nhs
  authored
  38ece50
- uses the new exception
  peterlavalle-nhs
  committed
  7247526
Commits on Oct 2, 2026
- changes to allow pip to access book_page
  peterlavalle-nhs
  committed
  db26a0c
- small logging messages
  peterlavalle-nhs
  committed
  65de773
- Merge remote-tracking branch 'origin/book_page' into book_page
  peterlavalle-nhs
  committed
  f470909
- more logging
  peterlavalle-nhs
  committed
  77245b8
- log during id generation
  peterlavalle-nhs
  committed
  9e98b1e
- remove the pd call
  peterlavalle-nhs
  committed
  dc1b873
- restored it - it wasn't the problem
  peterlavalle-nhs
  committed
  651c457
Commits on Oct 5, 2026
- ignore the coverage database
  peterlavalle-nhs
  committed
  57e1bd2
- removes duplicate parameters from _inplace
  peterlavalle-nhs
  committed
  117a386
- update docs (oops)
  peterlavalle-nhs
  committed
  3fc3d9d
- removes duplicate parameters from _inplace
  peterlavalle-nhs
  committed
  68309d8
- update docs (oops)
  peterlavalle-nhs
  committed
  700a568
- Merge branch 'shift_ignore' into shift_ignore_yaml
  peterlavalle-nhs
  committed
  f3dcf66
- shift ignore reading from YAML
  peterlavalle-nhs
  committed
  83c87ef
- detects old (bad) configs
  peterlavalle-nhs
  committed
  5091e8e
- don't count tests/ when checking coverage
  peterlavalle-nhs
  committed
  9441cf4
- debug logging for the ignores
  peterlavalle-nhs
  committed
  be338b1
- tests all pass with the new yaml file approach
  peterlavalle-nhs
  committed
  4215f13
- Merge branch 'shift_ignore' into book_page
  peterlavalle-nhs
  committed
  6e70a83
- just-enough to see if it helps
  peterlavalle-nhs
  committed
  de2be87
Commits on Oct 8, 2026
- test/uv updates
  peterlavalle-nhs
  committed
  1451435
- Merge branch 'book_page' into book_stream
  peterlavalle-nhs
  committed
  184230e
- pointed to the live copy
  peterlavalle-nhs
  committed
  77b5476
- WIP 93/111 tests pass
  peterlavalle-nhs
  committed
  cdc970d
Commits on Oct 9, 2026
- implements "row is blank" test and skipping
  peterlavalle-nhs
  committed
  817acb3
- "cheats" and switches the ambiguous date to iso8061
  peterlavalle-nhs
  committed
  e15626d
- corrected overlap detection and testing
  peterlavalle-nhs
  committed
  9266d43
- fixes missing patient id column detection
  peterlavalle-nhs
  committed
  8e04437
Commits on Oct 12, 2026
- added comments and checks for "skip holes"
  peterlavalle-nhs
  committed
  1206f2d
- Merge remote-tracking branch 'origin/main' into book_page
  peterlavalle-nhs
  committed
  357067c
- corrected the result of a rename
  peterlavalle-nhs
  committed
  7801176
- fix again
  peterlavalle-nhs
  committed
  bc74743
- allow header default to 0 in patient page, and, allow date values in the ignore file
  peterlavalle-nhs
  committed
  a17e990
- refactored the existing functions (as is) into separate files
  peterlavalle-nhs
  committed
  17de1f4
- brings book_page (and tests) into the project
  peterlavalle-nhs
  committed
  4a5e407
- raise different exception
  peterlavalle-nhs
  committed
  8dd5540
- refactors the shift_delta generation to be simpler and move checking into main
  peterlavalle-nhs
  committed
  cde02e7
- try to separate the sheet/row checks to be a standalone thing
  peterlavalle-nhs
  committed
  7266555
- refactored the loop control and parameter lookups into a scanner class
  peterlavalle-nhs
  committed
  bca28c5
- extracts the ignore rules to a subroutine
  peterlavalle-nhs
  committed
  1fc05bf
- idea for how to fixit
  peterlavalle-nhs
  committed
  7f75ba7
Commits on Oct 13, 2026
- more cleanup
  peterlavalle-nhs
  committed
  0f06412
- comments and removed a redundant check
  peterlavalle-nhs
  committed
  93da71d
Commits on Oct 14, 2026
- "orchestration" changes
  peterlavalle-nhs
  committed
  fe70510
- csv and excel workbooks now both try to parse dates to be consistent during unit testing
  peterlavalle-nhs
  committed
  e15b3c5
Commits on Oct 16, 2026
- adds the hidden-date bypass to book_page
  peterlavalle-nhs
  committed
  54d8c3e
- always allow "NULL" in date columns
  peterlavalle-nhs
  committed
  09e2e8a
- option to skip dating date
  peterlavalle-nhs
  committed
  a4eb73b
- add "skip" to sheet/page types
  peterlavalle-nhs
  committed
  c7d8776
- cut out normalise in a different way
  peterlavalle-nhs
  committed
  c17e023
- renamed and documented the bypasses
  peterlavalle-nhs
  committed
  a17deb2
- raise exceptions on abstract invocation
  peterlavalle-nhs
  committed
  c623097
- Potential fix for pull request finding 'CodeQL / Clear-text logging of sensitive information'
  
  g-pechorin
  and
  github-advanced-security[bot]
  authored
  24bd638
- renamed self to self
  peterlavalle-nhs
  committed
  780682a
- Merge remote-tracking branch 'origin/book_page' into book_page
  peterlavalle-nhs
  committed
  10c96df

Commits

Commits on Sep 28, 2026

Commits on Sep 29, 2026

Commits on Oct 1, 2026

Commits on Oct 2, 2026

Commits on Oct 5, 2026

Commits on Oct 8, 2026

Commits on Oct 9, 2026

Commits on Oct 12, 2026

Commits on Oct 13, 2026

Commits on Oct 14, 2026

Commits on Oct 16, 2026