Dev/covar memberships

.Rbuildignore

@@ -5,3 +5,6 @@ HOWTO_WRITE_A_MODEL
 mkpkg$
 orig$
 LICENSE
+.vscode
+dev
+^\.github$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,51 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+
+name: R-CMD-check.yaml
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

.vscode/launch.json

@@ -0,0 +1,50 @@
+{
+    // Utilisez IntelliSense pour en savoir plus sur les attributs possibles.
+    // Pointez pour afficher la description des attributs existants.
+    // Pour plus d'informations, visitez : https://go.microsoft.com/fwlink/?linkid=830387
+    "version": "0.2.0",
+    "configurations": [
+        {
+            "type": "R-Debugger",
+            "name": "Launch R-Workspace",
+            "request": "launch",
+            "debugMode": "workspace",
+            "workingDirectory": "${workspaceFolder}"
+        },
+        {
+            "type": "R-Debugger",
+            "name": "Debug R-File",
+            "request": "launch",
+            "debugMode": "file",
+            "workingDirectory": "${workspaceFolder}",
+            "file": "${file}"
+        },
+        {
+            "type": "R-Debugger",
+            "name": "Debug R-Function",
+            "request": "launch",
+            "debugMode": "function",
+            "workingDirectory": "${workspaceFolder}",
+            "file": "${file}",
+            "mainFunction": "main",
+            "allowGlobalDebugging": false
+        },
+        {
+            "type": "R-Debugger",
+            "name": "Debug R-Package",
+            "request": "launch",
+            "debugMode": "workspace",
+            "workingDirectory": "${workspaceFolder}",
+            "includePackageScopes": true,
+            "loadPackages": [
+                "."
+            ]
+        },
+        {
+            "type": "R-Debugger",
+            "request": "attach",
+            "name": "Attach to R process",
+            "splitOverwrittenOutput": true
+        }
+    ]
+}

.vscode/settings.json

@@ -0,0 +1,12 @@
+{
+    "[r]": {
+        "editor.formatOnPaste": false,
+        "editor.formatOnSave": false,
+        "editor.formatOnType": false
+    },
+    "[cpp]": {
+        "editor.formatOnPaste": false,
+        "editor.formatOnSave": false,
+        "editor.formatOnType": false
+    }
+}

DESCRIPTION

@@ -2,9 +2,9 @@ Package: blockmodels
 Type: Package
 Title: Latent and Stochastic Block Model Estimation by a 'V-EM'
         Algorithm
-Version: 1.1.5
+Version: 1.2.0
 Date: 2021-12-01
-Author: Jean-Benoist Leger <jbleger@hds.utc.fr>, Pierre Barbillon <pierre.barbillon@agroparistech.fr>, Julien Chiquet <julien.chiquet@inrae.fr>
+Author: Jean-Benoist Leger <jbleger@hds.utc.fr>, Pierre Barbillon <pierre.barbillon@agroparistech.fr>, Julien Chiquet <julien.chiquet@inrae.fr>, Louis Lacoste <louis.lacoste@inrae.fr>
 Maintainer: Jean-Benoist Leger <jbleger@hds.utc.fr>
 Description: Latent and Stochastic Block Model estimation by a Variational EM algorithm.
              Various probability distribution are provided (Bernoulli,
@@ -18,5 +18,8 @@ Imports:
     parallel, 
     methods, 
     digest
+Suggests:
+    testthat (>= 3.0.0)
+Config/testthat/edition: 3
 URL: https://github.com/jb-leger/blockmodels
 BugReports: https://github.com/jb-leger/blockmodels/issues