Issues

• Unable to install centrifuge using conda.

  DaehwanKimLab/centrifuge#288 · Filter by author JRayLab opened on Jan 10, 2026
  1

• centrifuge-kreport issue finding parent of taxID

  DaehwanKimLab/centrifuge#285 · Filter by author mezewudo opened on Mar 21, 2025
  10

• Centrifuge Build failing due to issues with centrifuge-build-bin

  DaehwanKimLab/centrifuge#283 · Filter by author meridiajane opened on Oct 29, 2024
  1

• Issues with Centrifuge Output for Functional Annotation

  DaehwanKimLab/centrifuge#282 · Filter by author PoojaThummar opened on Aug 12, 2024
  2

• Viral new File format?

  DaehwanKimLab/centrifuge#280 · Filter by author mwylerCH opened on Jun 24, 2024
  4

• centrifuge-kreport values do not ad

  DaehwanKimLab/centrifuge#276 · Filter by author pablorr24 opened on May 22, 2024
  3

• nt index incomplete build

  DaehwanKimLab/centrifuge#275 · Filter by author igordot opened on Apr 2, 2024
  21

• option --packed

  DaehwanKimLab/centrifuge#274 · Filter by author mwylerCH opened on Mar 28, 2024

• NCBI nt index

  DaehwanKimLab/centrifuge#273 · Filter by author igordot opened on Mar 21, 2024
  6

• Can using "--mm" flag reduce memory usage?

  DaehwanKimLab/centrifuge#272 · Filter by author nzx9581 opened on Mar 4, 2024
  2

• Database problem

  DaehwanKimLab/centrifuge#270 · Filter by author ADelacuv opened on Feb 15, 2024
  1

• M. tuberculosis genome size error

  DaehwanKimLab/centrifuge#267 · Filter by author DOH-KEW4303 opened on Jan 25, 2024

• not able to build database, taxonomy does not exist warnings, latest version by git

  DaehwanKimLab/centrifuge#266 · Filter by author koppk opened on Jan 21, 2024
  1

• centrifuge download fails

  DaehwanKimLab/centrifuge#263 · Filter by author ggonnella opened on Oct 30, 2023
  2

• Error downloading centrifuge databases

  DaehwanKimLab/centrifuge#262 · Filter by author rayomics opened on Sep 2, 2023
  11

• Error when downloading only bacteria version

  DaehwanKimLab/centrifuge#260 · Filter by author dafin678 opened on Jul 15, 2023
  3

• how to make seqid2taxid.map

  DaehwanKimLab/centrifuge#259 · Filter by author DAWNkKim opened on Jun 27, 2023
  1

• Error when executing centrifuge "Argument list too long"

  DaehwanKimLab/centrifuge#258 · Filter by author BenjaminJPerry opened on May 25, 2023
  4

• Custom database including only specific organisms for reads separation?

  DaehwanKimLab/centrifuge#257 · Filter by author akrzyno opened on Mar 29, 2023

• Where are you Sulfobacillus?

  DaehwanKimLab/centrifuge#255 · Filter by author DntBScrdDv opened on Feb 9, 2023
  33

• Calculate abundance without genome size taken into account

  DaehwanKimLab/centrifuge#253 · Filter by author pjtorres opened on Feb 2, 2023

• Unusual abundance results with custom classifier index

  DaehwanKimLab/centrifuge#252 · Filter by author hirosatosd opened on Feb 1, 2023
  6

• Unable to use sudo make install prefix=/usr/local

  DaehwanKimLab/centrifuge#251 · Filter by author JBriel1 opened on Dec 23, 2022
  4

• Error compiling on macOS ventura

  DaehwanKimLab/centrifuge#250 · Filter by author vicho33 opened on Nov 14, 2022
  1

• Warning: Encountered reference sequence with only gaps

  DaehwanKimLab/centrifuge#249 · Filter by author wittler-github opened on Oct 20, 2022
  2