[Bug]: Agent is usually blocked by "Reload scene" popup

[RedmanOne]

What happened?

Different Unity versions, different projects, same problem: agent thinks unity is importing assets, while in fact it asks user to Save/Reload scene, and it isn't getting solved until i directly instruct my agent to fix that issue

Reproduction steps

1. Launch an agent with Git- or Scene-related work
2. Observe stuck at the moment of scene reload request

Unity version

6000.4.1f, 6000.2.10f1, 6000.0.58f2

MCP for Unity package version

10.2.0

Python server version

3.11.15

MCP client

Claude Desktop

Transport

stdio

OS

Windows

Relevant logs / console output

No related logs available

Checks

• I searched existing issues and did not find a duplicate
• I included logs / steps to reproduce