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Param update #342

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801b8d8
Minor improvements in the parameters header documentation
vasvav Jul 22, 2023
227db8b
Set to read two parameters from configuration file while read some ot…
vasvav Jul 23, 2023
0d9433c
Set default simulation time step value to unit
vasvav Jul 23, 2023
0fe22b7
Revised the max/min bounds of simulation domain and the max displacem…
vasvav Jul 23, 2023
ddcc3e0
Formatting
nicogno Jul 24, 2023
1315210
Fixed mechanical interaction test
nicogno Jul 24, 2023
9bb241a
Fixed neuron soma tests
nicogno Jul 24, 2023
3d94aeb
Fixed more tests
nicogno Jul 24, 2023
cb7c4d1
Fixed more tests
nicogno Jul 24, 2023
f6eda66
Addresses SonarCloud code smells
nicogno Jul 24, 2023
d6b4bb6
Reverted param name changes
nicogno Jul 25, 2023
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45 changes: 30 additions & 15 deletions src/core/param/param.cc
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Original file line number Diff line number Diff line change
Expand Up @@ -62,6 +62,7 @@ void Param::Restore(Param&& other) {
other.groups_.clear();
}

// -----------------------------------------------------------------------------
Param::Param(const Param& other) {
*this = other;
for (auto el : other.groups_) {
Expand Down Expand Up @@ -223,9 +224,11 @@ void Param::AssignFromConfig(const std::shared_ptr<cpptoml::table>& config) {
el.second->AssignFromConfig(config);
}

// simulation group
// simulation parameters group
BDM_ASSIGN_CONFIG_VALUE(random_seed, "simulation.random_seed");
BDM_ASSIGN_CONFIG_VALUE(output_dir, "simulation.output_dir");
BDM_ASSIGN_CONFIG_VALUE(remove_output_dir_contents,
"simulation.remove_output_dir");
BDM_ASSIGN_CONFIG_VALUE(environment, "simulation.environment");
BDM_ASSIGN_CONFIG_VALUE(nanoflann_depth, "simulation.nanoflann_depth");
BDM_ASSIGN_CONFIG_VALUE(unibn_bucketsize, "simulation.unibn_bucketsize");
Expand All @@ -242,25 +245,30 @@ void Param::AssignFromConfig(const std::shared_ptr<cpptoml::table>& config) {
BDM_ASSIGN_CONFIG_VALUE(diffusion_method, "simulation.diffusion_method");
BDM_ASSIGN_CONFIG_VALUE(calculate_gradients,
"simulation.calculate_gradients");

AssignBoundSpaceMode(config, this);
AssignThreadSafetyMechanism(config, this);

// visualization group
// visualization parameters group
BDM_ASSIGN_CONFIG_VALUE(visualization_engine, "visualization.adaptor");
BDM_ASSIGN_CONFIG_VALUE(insitu_visualization, "visualization.insitu");
BDM_ASSIGN_CONFIG_VALUE(pv_insitu_pipeline,
"visualization.pv_insitu_pipeline");
BDM_ASSIGN_CONFIG_VALUE(pv_insitu_pipelinearguments,
"visualization.pv_insitu_pipelinearguments");
if ("paraview" == visualization_engine) {
BDM_ASSIGN_CONFIG_VALUE(pv_insitu_pipeline,
"visualization.pv_insitu_pipeline");
BDM_ASSIGN_CONFIG_VALUE(pv_insitu_pipelinearguments,
"visualization.pv_insitu_pipelinearguments");
}
BDM_ASSIGN_CONFIG_VALUE(root_visualization, "visualization.root");
BDM_ASSIGN_CONFIG_VALUE(export_visualization, "visualization.export");
BDM_ASSIGN_CONFIG_VALUE(visualization_interval, "visualization.interval");
BDM_ASSIGN_CONFIG_VALUE(visualization_export_generate_pvsm,
"visualization.export_generate_pvsm");
BDM_ASSIGN_CONFIG_VALUE(visualization_compress_pv_files,
"visualization.compress_pv_files");
if ("paraview" == visualization_engine) {
BDM_ASSIGN_CONFIG_VALUE(visualization_export_generate_pvsm,
"visualization.export_generate_pvsm");
BDM_ASSIGN_CONFIG_VALUE(visualization_compress_pv_files,
"visualization.compress_pv_files");
}

// visualize_agents
// visualization parameters group (for agents)
auto visualize_agentstarr = config->get_table_array("visualize_agent");
if (visualize_agentstarr) {
for (const auto& table : *visualize_agentstarr) {
Expand Down Expand Up @@ -292,7 +300,7 @@ void Param::AssignFromConfig(const std::shared_ptr<cpptoml::table>& config) {
}
}

// visualize_diffusion
// visualization parameters group (for diffusion grid)
auto visualize_diffusiontarr = config->get_table_array("visualize_diffusion");
if (visualize_diffusiontarr) {
for (const auto& table : *visualize_diffusiontarr) {
Expand Down Expand Up @@ -335,7 +343,7 @@ void Param::AssignFromConfig(const std::shared_ptr<cpptoml::table>& config) {
}
}

// performance group
// performance parameters group
BDM_ASSIGN_CONFIG_VALUE(scheduling_batch_size,
"performance.scheduling_batch_size");
BDM_ASSIGN_CONFIG_VALUE(detect_static_agents,
Expand All @@ -350,19 +358,26 @@ void Param::AssignFromConfig(const std::shared_ptr<cpptoml::table>& config) {
"performance.mem_mgr_max_mem_per_thread_factor");
BDM_ASSIGN_CONFIG_VALUE(minimize_memory_while_rebalancing,
"performance.minimize_memory_while_rebalancing");

AssignMappedDataArrayMode(config, this);

// development group
// development parameters group
BDM_ASSIGN_CONFIG_VALUE(statistics, "development.statistics");
BDM_ASSIGN_CONFIG_VALUE(debug_numa, "development.debug_numa");
BDM_ASSIGN_CONFIG_VALUE(show_simulation_step,
"development.show_simulation_step");
BDM_ASSIGN_CONFIG_VALUE(use_progress_bar, "development.use_progress_bar");
if (use_progress_bar) {
BDM_ASSIGN_CONFIG_VALUE(progress_bar_time_unit,
"development.progress_bar_time_unit");
}

// experimental group
// experimental parameters group
BDM_ASSIGN_CONFIG_VALUE(compute_target, "experimental.compute_target");
BDM_ASSIGN_CONFIG_VALUE(opencl_debug, "experimental.opencl_debug");
BDM_ASSIGN_CONFIG_VALUE(preferred_gpu, "experimental.preferred_gpu");
BDM_ASSIGN_CONFIG_VALUE(plot_memory_layout,
"experimental.plot_memory_layout");
}

} // namespace bdm
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