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refactor: removed min_swc_pts flag #7

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Merged
anna-grim merged 1 commit into from
Aug 10, 2026
Merged

refactor: removed min_swc_pts flag #7

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8 changes: 2 additions & 6 deletions src/arborist/utils/graph_loading.py
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Original file line number Diff line number Diff line change
Expand Up @@ -30,18 +30,16 @@ def __init__(
self,
anisotropy=(1.0, 1.0, 1.0),
min_cable_length=40.0,
min_swc_pts=1,
node_spacing=1,
prefetch=128,
prune_depth=24.0,
verbose=False,
):
self.min_cable_length = min_cable_length
self.min_swc_pts = min_swc_pts
self.node_spacing = node_spacing
self.prefetch = prefetch
self.prune_depth = prune_depth
self.swc_reader = swc_util.Reader(anisotropy, min_swc_pts, verbose)
self.swc_reader = swc_util.Reader(anisotropy, verbose)
self.verbose = verbose

def __call__(self, swc_pointer):
Expand All @@ -61,9 +59,7 @@ def __call__(self, swc_pointer):
``"is_soma"``.
"""
swc_dicts = self.swc_reader(swc_pointer)
swc_dicts = deque(
d for d in swc_dicts if len(d["xyz"]) > self.min_swc_pts
)
swc_dicts = deque(swc_dicts)
if self.verbose:
pbar = tqdm(total=len(swc_dicts), desc="Load Graphs")

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