feat: add GraphTransforms and graph_transform support to GraphDataset - #10
Merged
Conversation
anna-grim
commented
Aug 13, 2026
anna-grim
commented
Collaborator
- augmentation.py: add GraphTransforms class that applies RandomRotation3D, RandomMirror3D, and RandomJitter3D to the full (N_nodes, 3) node_xyz array of a subgraph so every curve receives the same spatial transform, preserving inter-curve relationships
- datasets.py: add graph_transform param to GraphDataset; applied to subgraph.node_xyz before path decomposition
- graph_transformer.py: replace fill_diagonal_() with ~torch.eye() to fix dynamo symbolic-shape crash under torch.compile
- augmentation.py: add GraphTransforms class that applies RandomRotation3D, RandomMirror3D, and RandomJitter3D to the full (N_nodes, 3) node_xyz array of a subgraph so every curve receives the same spatial transform, preserving inter-curve relationships - datasets.py: add graph_transform param to GraphDataset; applied to subgraph.node_xyz before path decomposition - graph_transformer.py: replace fill_diagonal_() with ~torch.eye() to fix dynamo symbolic-shape crash under torch.compile Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.