Issues

• update Dockerfile

  ssadedin/ximmer#42 · Filter by author tgambin opened on Aug 22, 2022
  2

• create_analysable_targets not working

  ssadedin/ximmer#41 · Filter by author brianlucla opened on Aug 3, 2022
  3

• Installation errors with xhmm

  ssadedin/ximmer#40 · Filter by author longfei-stat opened on Jan 10, 2022
  2

• How many bam do I need ?

  ssadedin/ximmer#39 · Filter by author dridk opened on Apr 19, 2021

• java error in the database download

  ssadedin/ximmer#37 · Filter by author flapa86 opened on Feb 17, 2021

• Failure in CNVDiagram produces empty js file

  ssadedin/ximmer#36 · Filter by author ssadedin opened on Oct 15, 2020

• Chromosome * is not analysable by CODEX and many more

  ssadedin/ximmer#35 · Filter by author vinzenzmay opened on Jul 30, 2020

• KILLED error when running ximmer through docker

  ssadedin/ximmer#34 · Filter by author emyli14 opened on Feb 4, 2020

• install script is missing

  ssadedin/ximmer#33 · Filter by author johnemajor opened on Nov 26, 2019

• config. java.lang.IllegalArgumentException: Please set the HGFA parameter to your human genome reference in the config file at: /usr/local/ximmer/eval/pipeline/config.groovy Error

  ssadedin/ximmer#29 · Filter by author hkrzystek opened on Sep 9, 2019
  5

• startup failed 107: expecting '*', found '<EOF>' @ line 107, column 1.

  ssadedin/ximmer#26 · Filter by author biobai opened on Aug 17, 2019

• Expose XIMMER_REF in config.groovy rather than a env variable for docker run

  ssadedin/ximmer#25 · Filter by author sclan opened on Jul 11, 2019

• ERROR: Sample CREATE_INDEX=true appears in more than one BAM file

  ssadedin/ximmer#24 · Filter by author kunstner opened on May 9, 2019

• ERROR: analysis pipeline did not produce expected analysed target region BED (running through docker)

  ssadedin/ximmer#23 · Filter by author xexpanderx opened on Apr 18, 2019
  3

• Empty diagram for CNV without gene annotation

  ssadedin/ximmer#22 · Filter by author pixuenan opened on Mar 5, 2019

• Wrong coverage block highlight on the cnv diagram

  ssadedin/ximmer#21 · Filter by author pixuenan opened on Mar 5, 2019

• docker install problem

  ssadedin/ximmer#20 · Filter by author jchenpku opened on Jan 8, 2019

• High false positive number and x-replacement simulation failure

  ssadedin/ximmer#18 · Filter by author pixuenan opened on Dec 24, 2018
  4

• Analysis failed - getting JAVA errors:groovy.lang.MissingMethodException: No signature of method: groovy.util.ConfigObject.MOPs()

  ssadedin/ximmer#17 · Filter by author SafinaAr opened on Nov 7, 2018
  16

• Error at install

  ssadedin/ximmer#16 · Filter by author gybeata opened on Nov 6, 2018
  5

• Analysis failed

  ssadedin/ximmer#13 · Filter by author natashapinto opened on Sep 6, 2018
  2

• Canot get ximmer to run on Ubuntu 16.04

  ssadedin/ximmer#11 · Filter by author chapplec opened on Aug 23, 2018
  7

• parameter to take in count relatedness in data

  ssadedin/ximmer#10 · Filter by author gybeata opened on Jun 13, 2018
  1

• Error

  ssadedin/ximmer#9 · Filter by author SamKap-2 opened on Feb 13, 2018
  2

• plans to host on dockerhub?

  ssadedin/ximmer#7 · Filter by author 0xaf1f opened on Feb 8, 2018
  5