I tried to install driven but I see the current version of its dependencies and the changes that came along with them broke the installation.
The error I am getting is related to cameo dependency:
Traceback (most recent call last):
File "d:\Coding\Repositories\Rejuvenatebiomed\Jupyter\cobrapy\iMAT.py", line 1, in <module>
from driven.flux_analysis.transcriptomics import gimme, imat
File "C:\Python39\lib\site-packages\driven\flux_analysis\transcriptomics.py", line 22, in <module>
from cameo.core.solver_based_model import SolverBasedModel
ModuleNotFoundError: No module named 'cameo.core.solver_based_model'
This is because, in the current release of cameo, there's no such thing as cameo.core.solver_based,
Since this could represent an issue with other dependencies as well, could you provide all the right / tested version of the dependencies with which you tested driven (a list with the versions or, ideally, a docker image)
Thank you,
Roland
I tried to install driven but I see the current version of its dependencies and the changes that came along with them broke the installation.
The error I am getting is related to cameo dependency:
This is because, in the current release of cameo, there's no such thing as cameo.core.solver_based,
Since this could represent an issue with other dependencies as well, could you provide all the right / tested version of the dependencies with which you tested driven (a list with the versions or, ideally, a docker image)
Thank you,
Roland