From 7834aa32a26b998b499dc32221d84c492cbe74b6 Mon Sep 17 00:00:00 2001
From: vinisalazar <17276653+vinisalazar@users.noreply.github.com>
Date: Wed, 5 Aug 2026 12:33:00 +1000
Subject: [PATCH] Point database.csv at nf-core/test-datasets

Nine db_path entries still fetched from the nickp60 fork even though every
file is already present on the nf-core funcprofiler branch. All 13 URLs
verified to return 200.

Co-authored-by: Jonas Scheid <43858870+jonasscheid@users.noreply.github.com>
---
 database.csv | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/database.csv b/database.csv
index 349a710d0..314d1800f 100644
--- a/database.csv
+++ b/database.csv
@@ -1,14 +1,14 @@
 tool,db_name,db_entity,db_params,db_path
-humann_v3,demo_v3,humann_nucleotide,,https://github.com/nickp60/test-datasets/raw/refs/heads/funcprofiler/data/database/humann/v3/chocophlan_nfDEMO.tar.gz
-humann_v3,demo_v3,humann_protein,,https://github.com/nickp60/test-datasets/raw/refs/heads/funcprofiler/data/database/humann/v3/uniref_nfDEMO.tar.gz
+humann_v3,demo_v3,humann_nucleotide,,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/humann/v3/chocophlan_nfDEMO.tar.gz
+humann_v3,demo_v3,humann_protein,,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/humann/v3/uniref_nfDEMO.tar.gz
 humann_v3,demo_v3,humann_metaphlan,,https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/metaphlan4_database.tar.gz
 humann_v3,demo_v3,humann_utility,,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/humann/v3/utility_nfDEMO.tar.gz
-fmhfunprofiler,fmhfunprofiler1000,,11 1000,https://github.com/nickp60/test-datasets/raw/refs/heads/funcprofiler/data/database/fmhfunprofiler/KOs_sketched_scaled_1000_demo.sig.zip
-rgi,4.0.1,,,https://github.com/nickp60/test-datasets/raw/refs/heads/funcprofiler/data/database/rgi/broadstreet-v4.0.1.tar.bz2
-humann_v4,demo_v4,humann_nucleotide,,https://github.com/nickp60/test-datasets/raw/refs/heads/funcprofiler/data/database/humann/v4/chocophlan_nfDEMO.tar.gz
-humann_v4,demo_v4,humann_protein,,https://github.com/nickp60/test-datasets/raw/refs/heads/funcprofiler/data/database/humann/v4/uniref_nfDEMO.tar.gz
-humann_v4,demo_v4,humann_utility,,https://github.com/nickp60/test-datasets/raw/refs/heads/funcprofiler/data/database/humann/v4/utility_nfDEMO.tar.gz
-humann_v4,demo_v4,humann_metaphlan,,https://github.com/nickp60/test-datasets/raw/refs/heads/funcprofiler/data/database/metaphlan/metaphlan_demo_for_humann4.tar.gz
-mifaser,GS-24-all,,,https://github.com/nickp60/test-datasets/raw/refs/heads/funcprofiler/data/database/mifaser/GS-24-all.tar.gz
+fmhfunprofiler,fmhfunprofiler1000,,11 1000,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/fmhfunprofiler/KOs_sketched_scaled_1000_demo.sig.zip
+rgi,4.0.1,,,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/rgi/broadstreet-v4.0.1.tar.bz2
+humann_v4,demo_v4,humann_nucleotide,,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/humann/v4/chocophlan_nfDEMO.tar.gz
+humann_v4,demo_v4,humann_protein,,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/humann/v4/uniref_nfDEMO.tar.gz
+humann_v4,demo_v4,humann_utility,,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/humann/v4/utility_nfDEMO.tar.gz
+humann_v4,demo_v4,humann_metaphlan,,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/metaphlan/metaphlan_demo_for_humann4.tar.gz
+mifaser,GS-24-all,,,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/mifaser/GS-24-all.tar.gz
 eggnogmapper,demo,eggnogmapper_data_dir,,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/eggnog-mapper/eggnog_data_dir.tar.gz
 diamond,bfragilis,,,https://raw.githubusercontent.com/nf-core/test-datasets/funcprofiler/data/database/diamond/bfragilis_proteome.dmnd