Taxa sqlite file name mismatch

[rmeinhart]

Description of the bug

Hello,

Thank you for developing this pipeline. Had some minor issues getting it up and running.

The taxa_sqlite files were saved as taxa.sqlite rather than taxa_sqlite.xz and same for taxa_sqlite_traverse.pkl as taxa.sqlite.traverse.pkl. They were saved in my home directory so it was possible to specify the paths with the correct names, but it would be great if you can correct the names when validating the parameters.

Additionally, the validation failed for kraken2_db when I specified just the full path, but worked when I specified the .tar.gz file with the path.

Thank you,
Ryan

Command used and terminal output

Relevant files

No response

System information

No response

[MeriamOs]

@rmeinhart thanks for raising this! What Nextflow and pipeline version did you use?

[rmeinhart]

Hi @MeriamOs,

Thanks for your response. The Nextflow version is 26.04.0 and the pipeline version is 2.0.1