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PARAmap API

This repo will contain an API serving two kinds of data to be rendered by PARAmap:

  1. data points of surveys of genetic markers, which come to us stored in the STAVE schema;
  2. and a surface of model outputs imputed from the survey data, which are essentially interpolated prevalences of the difference genetic markers per region.

How to update the data

Model outputs

TODO

The list of in-scope genes and mutations will vary over time, with model releases (rather than with STAVE data releases). Every model release has a dependency on one STAVE data release.

STAVE data

When a new STAVE data release is provided, it should be given a version name e.g. "2026.03.17", and committed in scripts/input/stave/<version>/stave_data.rds. Then, run the process_stave.R script:

Rscript ./scripts/process_stave.R 2026.03.17

This will create ./data/stave/<version>/survey_data.parquet.