From 5a6aebb43d823dd3ac0ac37f3216c8f033879006 Mon Sep 17 00:00:00 2001 From: Brandon Rose Date: Tue, 9 Dec 2025 09:16:21 -0600 Subject: [PATCH 1/2] add BDF specific v&v info/gh action --- .github/workflows/bdf_validate.yml | 13 ++++++ bdf.yaml | 73 ++++++++++++++++++++++++++++++ 2 files changed, 86 insertions(+) create mode 100644 .github/workflows/bdf_validate.yml create mode 100644 bdf.yaml diff --git a/.github/workflows/bdf_validate.yml b/.github/workflows/bdf_validate.yml new file mode 100644 index 0000000..89a209c --- /dev/null +++ b/.github/workflows/bdf_validate.yml @@ -0,0 +1,13 @@ +name: Validate BDF Tool + +on: + push: + branches: + - main + pull_request: + +jobs: + validate-tool: + uses: ARPA-H-BDF/bdfkb-schema/.github/workflows/ci-validate.yaml@main + with: + python-version: '3.11' diff --git a/bdf.yaml b/bdf.yaml new file mode 100644 index 0000000..6fc9eb4 --- /dev/null +++ b/bdf.yaml @@ -0,0 +1,73 @@ +version: 0.0.1 + +tool: + name: Beaker Biomedical + repo_url: https://github.com/jataware/biome + tool_homepage: https://beakerhub.com/ + documentation_url: https://jataware.github.io/beaker-kernel/ + tool_type: Notebook + +llm: + usesLlm: true + bringOwnKey: true + +input: + - name: use data and queries 1 + dataCategory: User driven biomedical data + queries + dataClass: "other" + dataType: "" + format: + - none + dataStandard: + - none + proprietary: true + source: https://www.cbioportal.org/ + +output: + - name: analysis of data 1 + dataCategory: Analysis of data + dataClass: "other" + dataType: "" + format: + - none + dataStandard: + - none + proprietary: true + source: "" + +license: + license_type: Other + link: https://github.com/jataware/biome/blob/main/LICENSE + +funding: + source: DARPA + agreement: Not specified + link: "" + +domains: + - Biomedical + +credit: + - name: Jataware + role: Developer + org: Jataware + url: https://jataware.com/ + +target_users: + primary_user: + user_type: researcher + technical_literacy_level: + - expert + biomedical_literacy_level: + - expert + +maturity: + beginning_maturity: 1 + current_maturity: 7 + +media: + [ + { "link": "https://github.com/jataware/biome" }, + ] + +collaborations: [] From b961648dad4e44771feccb03618e867c4768a070 Mon Sep 17 00:00:00 2001 From: Brandon Rose Date: Tue, 9 Dec 2025 09:17:12 -0600 Subject: [PATCH 2/2] minor update to bdf.yaml --- bdf.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bdf.yaml b/bdf.yaml index 6fc9eb4..1e155d4 100644 --- a/bdf.yaml +++ b/bdf.yaml @@ -21,7 +21,7 @@ input: dataStandard: - none proprietary: true - source: https://www.cbioportal.org/ + source: "" output: - name: analysis of data 1