diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock index 28df8931f..1fdc33336 100644 --- a/usegalaxy.org/annotation.yml.lock +++ b/usegalaxy.org/annotation.yml.lock @@ -21,6 +21,7 @@ tools: - 4efdca267d51 - b734db305578 - c2ef298da409 + - d8b0de0554a9 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: augustus @@ -151,6 +152,7 @@ tools: revisions: - 637ec5d5368c - 96e6283e4745 + - b7e91ff1a894 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: jcvi_gff_stats @@ -218,6 +220,7 @@ tools: - 1f5641a52664 - 31812e7a1315 - ded48b36f3b7 + - ef1966bcece3 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: ncbi_egapx @@ -737,6 +740,7 @@ tools: - name: hmmer_hmmemit owner: iuc revisions: + - 82d6ca8212dc - be03abdc6451 tool_panel_section_id: annotation tool_panel_section_label: Annotation diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock index 1355e75f8..69b3d12f1 100644 --- a/usegalaxy.org/assembly.yml.lock +++ b/usegalaxy.org/assembly.yml.lock @@ -280,6 +280,7 @@ tools: owner: bgruening revisions: - 045c7c3d8e59 + - 09cf7b520734 - 0ee0c3089254 - 170061c052ad - 284a1cb82b61 diff --git a/usegalaxy.org/emboss.yml.lock b/usegalaxy.org/emboss.yml.lock index 614b1f47d..cae79d72a 100644 --- a/usegalaxy.org/emboss.yml.lock +++ b/usegalaxy.org/emboss.yml.lock @@ -7,6 +7,7 @@ tools: owner: devteam revisions: - 63dd26468588 + - b60d6f1d72a9 - ce385837c160 - dba489bfcd62 - dc492eb6a4fc diff --git a/usegalaxy.org/evolution.yml.lock b/usegalaxy.org/evolution.yml.lock index 3a2941591..4001abf93 100644 --- a/usegalaxy.org/evolution.yml.lock +++ b/usegalaxy.org/evolution.yml.lock @@ -24,6 +24,7 @@ tools: - 0878b7fd5260 - 111bd54f6bc4 - 18a61a9c1601 + - 241108ef3506 - 24d024316465 - 524d31add34a - 563c3aa769f2 diff --git a/usegalaxy.org/fastq_quality_control.yml.lock b/usegalaxy.org/fastq_quality_control.yml.lock index 21337e611..de684fbd2 100644 --- a/usegalaxy.org/fastq_quality_control.yml.lock +++ b/usegalaxy.org/fastq_quality_control.yml.lock @@ -24,6 +24,7 @@ tools: - name: trimmomatic owner: pjbriggs revisions: + - 75a3b8da8e76 - 898b67846b47 - b9aaed85cbd1 - d94aff5ee623 diff --git a/usegalaxy.org/gemini.yml.lock b/usegalaxy.org/gemini.yml.lock index 83a29ce5a..95859a931 100644 --- a/usegalaxy.org/gemini.yml.lock +++ b/usegalaxy.org/gemini.yml.lock @@ -6,6 +6,7 @@ tools: - name: gemini_annotate owner: iuc revisions: + - 081adc1e0cd5 - cf0f0f05ba9f - f2f3bc622a16 tool_panel_section_id: gemini @@ -15,6 +16,7 @@ tools: revisions: - 18d13111692b - 2c68e29c3527 + - 8f410ca7eb89 tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_load @@ -22,11 +24,13 @@ tools: revisions: - 2270a8b83c12 - 45296e47d565 + - cca3391dc8b4 tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_query owner: iuc revisions: + - 11fdbee540e5 - 77a1e60fd1de - da74170c55c7 tool_panel_section_id: gemini @@ -34,30 +38,35 @@ tools: - name: gemini_actionable_mutations owner: iuc revisions: + - c2bd9670af64 - db47f4939381 tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_interactions owner: iuc revisions: + - 48021eee7e33 - f745f54638e5 tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_burden owner: iuc revisions: + - 2adedc87b4b8 - f0bf88e9e689 tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_db_info owner: iuc revisions: + - b1e50c7b840e - c2a413e47fe9 tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_stats owner: iuc revisions: + - 56d27b51656b - b92cfa44f5be tool_panel_section_id: gemini tool_panel_section_label: Gemini @@ -65,18 +74,21 @@ tools: owner: iuc revisions: - 4b5123d51e8c + - 84ede9f5fddb tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_amend owner: iuc revisions: - 334e946cacd4 + - fb2890358aa3 tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_set_somatic owner: iuc revisions: - 7814e39409d1 + - 96222aa3e86e tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_de_novo diff --git a/usegalaxy.org/graph_display_data.yml.lock b/usegalaxy.org/graph_display_data.yml.lock index 9344c21c6..21ff65844 100644 --- a/usegalaxy.org/graph_display_data.yml.lock +++ b/usegalaxy.org/graph_display_data.yml.lock @@ -44,6 +44,7 @@ tools: - name: jbrowse owner: iuc revisions: + - 1483285bdb7a - 17359b808b01 - 1cfc579079a6 - 2bb2e07a7a21 @@ -128,6 +129,7 @@ tools: - name: taxonomy_krona_chart owner: crs4 revisions: + - 7d01da0b9e18 - e9005d1f3cfd tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data @@ -280,6 +282,7 @@ tools: - bd99e8fbde97 - dbac244d2214 - f1691de443a7 + - fb6d30ca4ea6 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data - name: pe_histogram diff --git a/usegalaxy.org/machine_learning.yml.lock b/usegalaxy.org/machine_learning.yml.lock index 68763fd09..4aca20c3a 100644 --- a/usegalaxy.org/machine_learning.yml.lock +++ b/usegalaxy.org/machine_learning.yml.lock @@ -37,6 +37,7 @@ tools: - 7d84cdd45c15 - 8729f69e9207 - 94cd9ac4a9b1 + - a2e4242653ec - bbf30253c99f - c460abae83eb - c5150cceab47 @@ -50,6 +51,7 @@ tools: owner: goeckslab revisions: - 01e7c5481f13 + - 06ef6f6ebfb1 - 07acf85d1c6b - 0afd970bd8ae - 11fdac5affb3 @@ -94,6 +96,7 @@ tools: - 4a7df9abe4c4 - 4eca9d109de1 - 4fee4504646e + - 7363de120cc2 - 7422e87df409 - 7d16a7bd5f41 - 7d78a6afc958 diff --git a/usegalaxy.org/mapping.yml.lock b/usegalaxy.org/mapping.yml.lock index b8c4fd40b..b4955e52d 100644 --- a/usegalaxy.org/mapping.yml.lock +++ b/usegalaxy.org/mapping.yml.lock @@ -134,6 +134,7 @@ tools: - 45795f582ae9 - 5ef7ec16b04f - 79b885ce78d7 + - 7f694df20f73 - a00cceb45700 - a2f232ff85ed - a6fba3d92531 @@ -233,6 +234,7 @@ tools: owner: iuc revisions: - 35ea4a8b1ea6 + - f9ea02afa87d tool_panel_section_id: mapping tool_panel_section_label: Mapping - name: ucsc_axtchain diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock index 1d147d6c5..a2e236883 100644 --- a/usegalaxy.org/metagenomic_analysis.yml.lock +++ b/usegalaxy.org/metagenomic_analysis.yml.lock @@ -28,6 +28,7 @@ tools: - 60f307965815 - 62c9df8382c2 - 64be1ac21109 + - 7483f7d26984 - 8b8a3f793f0f - 9553180705b7 - a02aa0dfb850 @@ -74,6 +75,7 @@ tools: - name: kraken owner: devteam revisions: + - 407507e321b3 - 766d5f63b0f4 - 8ba2174315aa - aec58624706f @@ -82,6 +84,7 @@ tools: - name: taxonomy_krona_chart owner: crs4 revisions: + - 7d01da0b9e18 - e9005d1f3cfd tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis @@ -547,6 +550,7 @@ tools: revisions: - 95bf7479d53c - a00df747f03c + - a6fd47ecbff8 - c2803012bbb3 - fc6c328c292f tool_panel_section_id: metagenomic_analysis @@ -674,6 +678,7 @@ tools: - name: recentrifuge owner: iuc revisions: + - 2db2dc0eca8c - 591175c0f051 - 612df2a5054f - 613ee22af97c @@ -992,12 +997,14 @@ tools: revisions: - 73b667038f46 - 8c957deb8a68 + - c91014de79d2 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: coverm_contig owner: iuc revisions: - 28d740f2c0b0 + - 66919d81c4d1 - d9b724b4a136 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis @@ -1126,6 +1133,7 @@ tools: - name: kegg_pathways_completeness owner: iuc revisions: + - 76ad4572eea4 - 78990897aa94 - 9933e2f91584 tool_panel_section_id: metagenomic_analysis @@ -1164,6 +1172,7 @@ tools: owner: iuc revisions: - 303e095c89c6 + - 66378faa1313 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: comebin diff --git a/usegalaxy.org/multiomics.yml.lock b/usegalaxy.org/multiomics.yml.lock index 93221a766..f5d290a41 100644 --- a/usegalaxy.org/multiomics.yml.lock +++ b/usegalaxy.org/multiomics.yml.lock @@ -6,6 +6,7 @@ tools: - name: episcanpy_cluster_embed owner: iuc revisions: + - 4e214c0acd59 - f4713992f23a tool_panel_section_id: multiomics tool_panel_section_label: Multiomics diff --git a/usegalaxy.org/multiple_alignments.yml.lock b/usegalaxy.org/multiple_alignments.yml.lock index 602a60f3f..89768ca77 100644 --- a/usegalaxy.org/multiple_alignments.yml.lock +++ b/usegalaxy.org/multiple_alignments.yml.lock @@ -121,6 +121,7 @@ tools: owner: iuc revisions: - 27fff8d3793e + - 298dceed950c - 2d2fe522553d - 5b0b49b5421c - 636b049e6141 diff --git a/usegalaxy.org/rna_seq.yml.lock b/usegalaxy.org/rna_seq.yml.lock index e3334e13d..3245adaed 100644 --- a/usegalaxy.org/rna_seq.yml.lock +++ b/usegalaxy.org/rna_seq.yml.lock @@ -37,6 +37,7 @@ tools: - 26371a1df031 - 6c19daec423d - b12d81af0291 + - eaa10652acc2 - f4af63aaf57a - fbf98f24097b tool_panel_section_id: rna_seq @@ -104,12 +105,14 @@ tools: - 4f9c4e6566e5 - 60f888039fb2 - c971db6f0fe5 + - f71c54748ff2 tool_panel_section_id: rna_seq tool_panel_section_label: RNA-seq - name: kallisto_pseudo owner: iuc revisions: - 01247aaf0a10 + - 3741c4204eb5 - 5ae5c312d718 - 87c11c05d238 - ce5d418183c5 @@ -164,6 +167,7 @@ tools: - b9e04854e2bb - c772497b2c32 - d5659efd66aa + - d8d32326fbfb - de21b616f03a tool_panel_section_id: rna_seq tool_panel_section_label: RNA-seq diff --git a/usegalaxy.org/single_cell.yml.lock b/usegalaxy.org/single_cell.yml.lock index 3228423d3..0c7c4ca04 100644 --- a/usegalaxy.org/single_cell.yml.lock +++ b/usegalaxy.org/single_cell.yml.lock @@ -219,6 +219,7 @@ tools: - name: dropletutils owner: iuc revisions: + - 10d928447114 - 2c1200fba922 - a9caad671439 - cdf4443d5625 @@ -583,6 +584,7 @@ tools: owner: iuc revisions: - 29f5f25b9935 + - 4f1baeda3aca tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: sinto_barcode @@ -747,6 +749,7 @@ tools: owner: iuc revisions: - 6154937135c7 + - 83f3879b10e8 - c520f64ffd57 - fee4b4eb0ef5 tool_panel_section_id: single_cell @@ -764,6 +767,7 @@ tools: revisions: - 46ed93e8da30 - 54ee3884e7ca + - a9085181e2a8 - c15978515ff0 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell diff --git a/usegalaxy.org/text_manipulation.yml.lock b/usegalaxy.org/text_manipulation.yml.lock index 38a6f678f..ea1a19d0d 100644 --- a/usegalaxy.org/text_manipulation.yml.lock +++ b/usegalaxy.org/text_manipulation.yml.lock @@ -129,6 +129,7 @@ tools: - 56a8da1f2243 - 60ff16842fcd - 93a3ce78ce55 + - c656214aa052 - cd36d6e45e29 - dddadbbac949 tool_panel_section_id: text_manipulation @@ -183,6 +184,7 @@ tools: - name: filter_tabular owner: iuc revisions: + - 26fc6cf774d4 - 34d29339abab - 4d5aae46f850 - 557ec8d7087d diff --git a/usegalaxy.org/transposon_insertion_sequencing.yml.lock b/usegalaxy.org/transposon_insertion_sequencing.yml.lock index 4f51abfa5..144a3fa11 100644 --- a/usegalaxy.org/transposon_insertion_sequencing.yml.lock +++ b/usegalaxy.org/transposon_insertion_sequencing.yml.lock @@ -10,6 +10,7 @@ tools: - 58234d95978d - 625d5ea9f3c7 - 8e4a4f240961 + - be540ea30602 - d1855ded740a tool_panel_section_id: transposon_insertion_sequencing tool_panel_section_label: Transposon Insertion Sequencing diff --git a/usegalaxy.org/variant_calling.yml.lock b/usegalaxy.org/variant_calling.yml.lock index e95b83136..be776274a 100644 --- a/usegalaxy.org/variant_calling.yml.lock +++ b/usegalaxy.org/variant_calling.yml.lock @@ -59,6 +59,7 @@ tools: - 3e954e7125bf - 85dc96ebc770 - a5937157062f + - c752293b798c - e698621cca1f - ef2c525bd8cd tool_panel_section_id: variant_calling @@ -223,6 +224,7 @@ tools: - 287c4af133e6 - 2898012c5265 - 3be27a9a7313 + - '503487218735' - 53ce8be43212 - fb0bb7174530 - fd2d6e035c3f @@ -277,6 +279,7 @@ tools: - 43fffeed243f - 93c4b04a0769 - ceff2f6a5368 + - dcd4681273f7 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: jasminesv @@ -329,6 +332,7 @@ tools: owner: iuc revisions: - 5804f786060d + - 67ef1dddcad9 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: arriba diff --git a/usegalaxy.org/virology.yml.lock b/usegalaxy.org/virology.yml.lock index 65becca2a..9b5bca1a0 100644 --- a/usegalaxy.org/virology.yml.lock +++ b/usegalaxy.org/virology.yml.lock @@ -152,6 +152,7 @@ tools: - 290071465e6e - 877e80114d25 - 92b9fd5f1f9f + - a56510b3c4ed tool_panel_section_id: virology tool_panel_section_label: Virology - name: vibrant